Variant report

Variant	rs74129513
Chromosome Location	chr10:26224399-26224400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56880737	0.95[AFR][1000 genomes]
rs58452338	1.00[AMR][1000 genomes]
rs60654439	1.00[AMR][1000 genomes]
rs7070012	1.00[AMR][1000 genomes]
rs7080103	1.00[AMR][1000 genomes]
rs7087639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7094042	1.00[AMR][1000 genomes]
rs74126793	0.95[AFR][1000 genomes]
rs74126800	1.00[AMR][1000 genomes]
rs74129512	1.00[AMR][1000 genomes]
rs74129517	1.00[AMR][1000 genomes]
rs74129518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129524	1.00[AMR][1000 genomes]
rs7909401	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26222400-26224800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:26222400-26228000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr10:26222600-26224400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:26223000-26224400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:26223000-26224400	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:26223000-26224400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:26223400-26224400	Bivalent/Poised TSS	Fetal Kidney	kidney
8	chr10:26223600-26224400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr10:26223600-26224400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
10	chr10:26223800-26224400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
11	chr10:26223800-26224600	Active TSS	Brain Germinal Matrix	brain
12	chr10:26224000-26224400	Active TSS	H1 Cell Line	embryonic stem cell
13	chr10:26224000-26224400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:26224000-26224400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
15	chr10:26224000-26224400	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:26224000-26224400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
17	chr10:26224000-26224600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
18	chr10:26224000-26224600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
19	chr10:26224200-26224400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
20	chr10:26224200-26224400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
21	chr10:26224200-26224400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:26224200-26224400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
23	chr10:26224200-26224400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:26224200-26224400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
25	chr10:26224200-26224400	Bivalent Enhancer	Fetal Intestine Large	intestine
26	chr10:26224200-26224600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:26224200-26224600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
28	chr10:26224200-26224600	Bivalent Enhancer	Primary B cells from cord blood	blood
29	chr10:26224200-26224600	Bivalent Enhancer	Fetal Lung	lung
30	chr10:26224200-26224800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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