Variant report

Variant	rs74129517
Chromosome Location	chr10:26253203-26253204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58452338	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60654439	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61166114	0.95[AFR][1000 genomes]
rs7070012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080103	1.00[AMR][1000 genomes]
rs7087639	1.00[AMR][1000 genomes]
rs7093969	1.00[AMR][1000 genomes]
rs7094042	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126800	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129512	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129513	1.00[AMR][1000 genomes]
rs74129518	1.00[AMR][1000 genomes]
rs74129519	0.88[AFR][1000 genomes]
rs74129524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129532	0.95[AFR][1000 genomes]
rs74129533	0.95[AFR][1000 genomes]
rs7909401	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26244200-26254400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:26250800-26261200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26252600-26254400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:26252600-26254400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:26252800-26255400	Weak transcription	Brain Germinal Matrix	brain
6	chr10:26252800-26255400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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