Variant report

Variant	rs74129533
Chromosome Location	chr10:26305437-26305438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58452338	0.87[AFR][1000 genomes]
rs58657505	1.00[AMR][1000 genomes]
rs60654439	0.88[AFR][1000 genomes]
rs61166114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7070012	0.95[AFR][1000 genomes]
rs7094042	0.90[AFR][1000 genomes]
rs74126800	0.88[AFR][1000 genomes]
rs74129512	0.90[AFR][1000 genomes]
rs74129517	0.95[AFR][1000 genomes]
rs74129519	0.84[AFR][1000 genomes]
rs74129524	0.95[AFR][1000 genomes]
rs74129532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26302400-26310200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26304000-26313200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26305000-26306000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:26305000-26306000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:26305400-26306000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:26305400-26306000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:26305400-26306000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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