Variant report

Variant	rs74132219
Chromosome Location	chr1:185313403-185313404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185285222..185287975-chr1:185313401..185316015,2	K562	blood:

Variant related genes	Relation type
ENSG00000116679	Chromatin interaction
ENSG00000273004	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16823977	1.00[AFR][1000 genomes]
rs57172687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59295359	1.00[AFR][1000 genomes]
rs60373073	1.00[AFR][1000 genomes]
rs74132217	1.00[AFR][1000 genomes]
rs74132220	1.00[AFR][1000 genomes]
rs74132221	1.00[AFR][1000 genomes]
rs74132289	1.00[AFR][1000 genomes]
rs74132291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132300	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	esv2756872	chr1:185293197-185345771	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2758981	chr1:185293197-185345771	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185308800-185317600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr1:185309400-185315400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr1:185309600-185313800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:185309600-185314800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:185309600-185314800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:185309600-185315000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:185309600-185315000	Weak transcription	GM12878-XiMat	blood
8	chr1:185309600-185315200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr1:185309800-185313600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr1:185310200-185314400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:185310200-185315200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:185310200-185315200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr1:185310200-185315400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:185310400-185315200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:185310600-185314400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr1:185310800-185314600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr1:185310800-185315200	Weak transcription	Primary T cells from cord blood	blood
18	chr1:185310800-185315200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr1:185310800-185318600	Enhancers	HepG2	liver
20	chr1:185311000-185314200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:185311000-185315200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr1:185311000-185315400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr1:185311000-185315600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr1:185311400-185313800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:185311400-185313800	Enhancers	Brain Hippocampus Middle	brain
26	chr1:185311800-185313800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr1:185311800-185313800	Enhancers	Brain Substantia Nigra	brain
28	chr1:185311800-185314200	Enhancers	Brain Cingulate Gyrus	brain
29	chr1:185312600-185314200	Enhancers	Brain Angular Gyrus	brain
30	chr1:185312800-185313800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr1:185313200-185313800	Enhancers	Brain Anterior Caudate	brain
32	chr1:185313200-185315400	Weak transcription	Ovary	ovary
33	chr1:185313200-185317400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links