Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196195233..196196964-chr1:196196967..196198866,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10922057	0.85[ASN][1000 genomes]
rs11806479	0.85[ASN][1000 genomes]
rs16829753	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16839668	1.00[EUR][1000 genomes]
rs16839682	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16839685	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16839693	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16839698	0.98[EUR][1000 genomes]
rs16839700	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16839716	0.98[EUR][1000 genomes]
rs16839751	0.94[EUR][1000 genomes]
rs16839758	0.94[EUR][1000 genomes]
rs16839763	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16839771	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16839782	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16839791	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16839795	0.90[EUR][1000 genomes]
rs16839822	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17639647	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2296269	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41451950	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61328263	0.85[ASN][1000 genomes]
rs61710289	0.85[ASN][1000 genomes]
rs73065831	0.85[ASN][1000 genomes]
rs73065837	0.85[ASN][1000 genomes]
rs74133640	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74133658	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7527779	0.85[ASN][1000 genomes]
rs9725530	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872948	chr1:195872295-196236425	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv534209	chr1:196011881-196208885	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv872952	chr1:196174790-196304223	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv548741	chr1:196186750-196293493	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196194800-196205200	Strong transcription	Liver	Liver
2	chr1:196195600-196210600	Weak transcription	Fetal Brain Male	brain
3	chr1:196197400-196213000	Weak transcription	Ovary	ovary
4	chr1:196197800-196218400	Weak transcription	Fetal Muscle Trunk	muscle

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