Variant report
| Variant | rs74133640 |
|---|---|
| Chromosome Location | chr1:196223422-196223423 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs16829753 | 0.94[EUR][1000 genomes] |
| rs16839668 | 0.96[EUR][1000 genomes] |
| rs16839682 | 0.98[EUR][1000 genomes] |
| rs16839685 | 0.91[EUR][1000 genomes] |
| rs16839693 | 0.96[EUR][1000 genomes] |
| rs16839698 | 0.98[EUR][1000 genomes] |
| rs16839700 | 0.98[EUR][1000 genomes] |
| rs16839716 | 0.98[EUR][1000 genomes] |
| rs16839751 | 0.94[EUR][1000 genomes] |
| rs16839758 | 0.94[EUR][1000 genomes] |
| rs16839763 | 0.94[EUR][1000 genomes] |
| rs16839771 | 0.90[EUR][1000 genomes] |
| rs16839782 | 0.90[EUR][1000 genomes] |
| rs16839791 | 0.90[EUR][1000 genomes] |
| rs16839795 | 0.90[EUR][1000 genomes] |
| rs16839822 | 0.90[EUR][1000 genomes] |
| rs17639647 | 0.88[EUR][1000 genomes] |
| rs2296269 | 0.90[EUR][1000 genomes] |
| rs41451950 | 0.90[EUR][1000 genomes] |
| rs74133631 | 0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs74133658 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872948 | chr1:195872295-196236425 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv872952 | chr1:196174790-196304223 | Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv548741 | chr1:196186750-196293493 | Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv832237 | chr1:196205674-196328500 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:196214000-196241400 | Weak transcription | Liver | Liver |
| 2 | chr1:196214600-196247800 | Weak transcription | Ovary | ovary |
