Variant report

Variant	rs74134902
Chromosome Location	chr10:54969011-54969012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56169287	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59387589	1.00[AMR][1000 genomes]
rs74134517	1.00[AMR][1000 genomes]
rs74134518	1.00[AMR][1000 genomes]
rs74134524	1.00[AMR][1000 genomes]
rs74134532	1.00[AMR][1000 genomes]
rs74134900	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74137405	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv831878	chr10:54902106-55085586	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1054455	chr10:54932474-55001559	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv895408	chr10:54938398-54999514	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54966000-54969600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:54966400-54981600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:54968600-54970800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:54968800-54970000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:54968800-54970200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:54968800-54970600	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links