Variant report

Variant	rs74135755
Chromosome Location	chr10:43901515-43901516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43901067..43903154-chr19:16299161..16302163,3	K562	blood:
2	chr10:43867647..43875264-chr10:43900659..43906151,11	MCF-7	breast:
3	chr10:43901370..43906375-chr10:43928042..43934083,16	MCF-7	breast:
4	chr10:43899870..43905980-chr10:43953401..43957689,7	MCF-7	breast:
5	chr10:43901430..43902327-chr11:67272570..67273511,2	Hela-S3	cervix:
6	chr10:43887055..43906178-chr10:43946385..43955803,85	K562	blood:

Variant related genes	Relation type
ENSG00000267033	Chromatin interaction
ENSG00000243660	Chromatin interaction
ENSG00000150201	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000252532	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60023398	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv825354	chr10:43883418-43949936	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv825355	chr10:43890579-43923802	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv825356	chr10:43893080-43946515	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43893200-43901600	Weak transcription	HSMMtube	muscle
2	chr10:43893600-43902200	Weak transcription	Aorta	Aorta
3	chr10:43894400-43901600	Weak transcription	Brain Germinal Matrix	brain
4	chr10:43894800-43901600	Weak transcription	Fetal Brain Female	brain
5	chr10:43895200-43901600	Weak transcription	Fetal Kidney	kidney
6	chr10:43897000-43902400	Transcr. at gene 5' and 3'	Dnd41	blood
7	chr10:43897400-43901800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:43899200-43902000	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr10:43899400-43901600	Enhancers	Gastric	stomach
10	chr10:43899400-43902600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr10:43899800-43901800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:43900000-43902600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:43900200-43904600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
14	chr10:43900400-43901600	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:43900400-43901600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr10:43900800-43901600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:43900800-43901600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr10:43900800-43901800	Enhancers	Fetal Muscle Trunk	muscle
19	chr10:43900800-43902000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr10:43900800-43902200	Flanking Active TSS	Thymus	Thymus
21	chr10:43900800-43902400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr10:43900800-43905600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:43901000-43901600	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
24	chr10:43901000-43901600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr10:43901000-43901600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr10:43901000-43901600	Enhancers	Fetal Lung	lung
27	chr10:43901000-43901600	Genic enhancers	Fetal Muscle Leg	muscle
28	chr10:43901000-43901800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:43901000-43901800	Flanking Active TSS	Fetal Intestine Large	intestine
30	chr10:43901000-43901800	Enhancers	Left Ventricle	heart
31	chr10:43901000-43901800	Transcr. at gene 5' and 3'	NHEK	skin
32	chr10:43901000-43902000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr10:43901000-43902000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:43901000-43902000	Enhancers	Spleen	Spleen
35	chr10:43901000-43902000	Transcr. at gene 5' and 3'	A549	lung
36	chr10:43901000-43902400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr10:43901000-43903400	Enhancers	Fetal Heart	heart
38	chr10:43901000-43905800	Active TSS	HSMM	muscle
39	chr10:43901200-43901600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr10:43901200-43901600	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:43901200-43901600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr10:43901200-43901600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr10:43901200-43901600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:43901200-43901600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:43901200-43901600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:43901200-43901600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr10:43901200-43901600	Enhancers	Fetal Stomach	stomach
48	chr10:43901200-43901600	Flanking Active TSS	HepG2	liver
49	chr10:43901200-43901600	Flanking Active TSS	NHDF-Ad	bronchial
50	chr10:43901200-43901600	Flanking Active TSS	NHLF	lung

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