Variant report
| Variant | rs74137510 |
|---|---|
| Chromosome Location | chr1:186790895-186790896 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:186790146..186792440-chr1:186793837..186796185,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs55921572 | 1.00[AMR][1000 genomes] |
| rs56090790 | 1.00[AMR][1000 genomes] |
| rs56188449 | 1.00[AMR][1000 genomes] |
| rs56306057 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56810817 | 1.00[AMR][1000 genomes] |
| rs60286945 | 1.00[AMR][1000 genomes] |
| rs61556660 | 1.00[AMR][1000 genomes] |
| rs74134742 | 1.00[AMR][1000 genomes] |
| rs74134979 | 1.00[AMR][1000 genomes] |
| rs74134980 | 1.00[AMR][1000 genomes] |
| rs74134981 | 1.00[AMR][1000 genomes] |
| rs74134984 | 1.00[AMR][1000 genomes] |
| rs74134985 | 1.00[AMR][1000 genomes] |
| rs74134986 | 1.00[AMR][1000 genomes] |
| rs74134987 | 1.00[AMR][1000 genomes] |
| rs74134988 | 1.00[AMR][1000 genomes] |
| rs74134990 | 1.00[AMR][1000 genomes] |
| rs74134999 | 1.00[AMR][1000 genomes] |
| rs74137505 | 1.00[AMR][1000 genomes] |
| rs74137509 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74137511 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74137512 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74137514 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74137515 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74137516 | 0.84[AFR][1000 genomes] |
| rs74137518 | 0.84[AFR][1000 genomes] |
| rs74137519 | 0.84[AFR][1000 genomes] |
| rs74137520 | 0.84[AFR][1000 genomes] |
| rs74137521 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762854 | chr1:186547101-186847574 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv872590 | chr1:186557453-187500338 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 3 | nsv466272 | chr1:186742947-186803226 | Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv548406 | chr1:186742947-186803226 | Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:186789000-186797200 | Weak transcription | A549 | lung |
| 2 | chr1:186789400-186797600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
