Variant report

Variant	rs74134987
Chromosome Location	chr1:186749619-186749620
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:186727470..186729684-chr1:186748131..186750420,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10752972	1.00[ASN][1000 genomes]
rs12088741	1.00[ASN][1000 genomes]
rs12738146	1.00[ASN][1000 genomes]
rs1883272	1.00[ASN][1000 genomes]
rs1997673	1.00[ASN][1000 genomes]
rs2064132	1.00[ASN][1000 genomes]
rs2066823	1.00[ASN][1000 genomes]
rs2066824	1.00[ASN][1000 genomes]
rs2205952	1.00[ASN][1000 genomes]
rs3218622	1.00[ASN][1000 genomes]
rs3218623	1.00[ASN][1000 genomes]
rs3218624	1.00[ASN][1000 genomes]
rs4140563	1.00[ASN][1000 genomes]
rs4648257	1.00[ASN][1000 genomes]
rs4648260	1.00[ASN][1000 genomes]
rs4648262	1.00[ASN][1000 genomes]
rs4648264	1.00[ASN][1000 genomes]
rs4648265	1.00[ASN][1000 genomes]
rs4648267	1.00[ASN][1000 genomes]
rs4648296	1.00[ASN][1000 genomes]
rs4648297	1.00[ASN][1000 genomes]
rs4648299	1.00[ASN][1000 genomes]
rs4651325	1.00[ASN][1000 genomes]
rs5270	1.00[ASN][1000 genomes]
rs5271	1.00[ASN][1000 genomes]
rs5278	1.00[ASN][1000 genomes]
rs55749947	1.00[ASN][1000 genomes]
rs55921572	1.00[AMR][1000 genomes]
rs56090790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56188449	1.00[AMR][1000 genomes]
rs56253891	1.00[ASN][1000 genomes]
rs56306057	1.00[AMR][1000 genomes]
rs56810817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57412622	1.00[ASN][1000 genomes]
rs60286945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61403154	1.00[ASN][1000 genomes]
rs61556660	1.00[AMR][1000 genomes]
rs66476634	1.00[ASN][1000 genomes]
rs74134742	1.00[AMR][1000 genomes]
rs74134979	1.00[AMR][1000 genomes]
rs74134980	1.00[AMR][1000 genomes]
rs74134981	1.00[AMR][1000 genomes]
rs74134984	1.00[AMR][1000 genomes]
rs74134985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74134988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74134990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134999	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74135000	1.00[ASN][1000 genomes]
rs74137505	1.00[AMR][1000 genomes]
rs74137506	1.00[ASN][1000 genomes]
rs74137507	1.00[ASN][1000 genomes]
rs74137508	1.00[ASN][1000 genomes]
rs74137509	1.00[AMR][1000 genomes]
rs74137510	1.00[AMR][1000 genomes]
rs74137511	1.00[AMR][1000 genomes]
rs74137512	1.00[AMR][1000 genomes]
rs74137513	1.00[ASN][1000 genomes]
rs74137514	1.00[AMR][1000 genomes]
rs74137515	1.00[AMR][1000 genomes]
rs7552522	1.00[ASN][1000 genomes]
rs760707	1.00[ASN][1000 genomes]
rs760708	1.00[ASN][1000 genomes]
rs760709	1.00[ASN][1000 genomes]
rs988905	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv2762854	chr1:186547101-186847574	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv466272	chr1:186742947-186803226	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv548406	chr1:186742947-186803226	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186745400-186751000	Weak transcription	Fetal Lung	lung
2	chr1:186745600-186751000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:186745600-186751000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:186745600-186751000	Weak transcription	NHEK	skin
5	chr1:186746400-186751000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:186748400-186749800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:186748800-186749800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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