The 2.0 version of rSNPBase

Variant report

Variant rs2066823
Chromosome Location chr1:186648157-186648158
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186632800-186649000 Weak transcription Fetal Lung lung
2 chr1:186639400-186648400 Weak transcription Primary hematopoietic stem cells blood
3 chr1:186640800-186648200 Weak transcription Brain Angular Gyrus brain
4 chr1:186640800-186649200 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:186641600-186648400 Weak transcription NHLF lung
6 chr1:186641800-186648400 Weak transcription Fetal Muscle Trunk muscle
7 chr1:186642200-186649200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:186642200-186649200 Weak transcription Placenta Amnion Placenta Amnion
9 chr1:186642400-186649200 Weak transcription Gastric stomach
10 chr1:186642600-186648200 Weak transcription Fetal Intestine Small intestine
11 chr1:186644000-186648400 Weak transcription Adipose Nuclei Adipose
12 chr1:186644200-186649000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr1:186644200-186649000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:186644200-186649000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:186644200-186649200 Weak transcription Lung lung
16 chr1:186644400-186648400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr1:186644400-186649000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr1:186644400-186649200 Weak transcription Aorta Aorta
19 chr1:186644600-186648200 Weak transcription Fetal Stomach stomach
20 chr1:186644600-186648800 Weak transcription Fetal Muscle Leg muscle
21 chr1:186644600-186649000 Weak transcription Ovary ovary
22 chr1:186645800-186648400 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:186645800-186649200 Weak transcription Spleen Spleen
24 chr1:186646000-186648200 Weak transcription Rectal Smooth Muscle rectum
25 chr1:186646000-186648200 Weak transcription NH-A brain
26 chr1:186646400-186648400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:186646400-186651000 Active TSS Breast Myoepithelial Primary Cells Breast
28 chr1:186646600-186648200 Genic enhancers Primary neutrophils fromperipheralblood blood
29 chr1:186646800-186649200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:186647000-186648200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:186647000-186652000 Active TSS Stomach Smooth Muscle stomach
32 chr1:186647600-186648200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:186647600-186648400 Transcr. at gene 5' and 3' Duodenum Smooth Muscle Duodenum
34 chr1:186647600-186648600 Flanking Active TSS HUVEC blood vessel
35 chr1:186647600-186651000 Active TSS A549 lung
36 chr1:186647800-186648200 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr1:186647800-186648200 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:186647800-186648200 Transcr. at gene 5' and 3' Monocytes-CD14+_RO01746 blood
39 chr1:186647800-186648400 Genic enhancers Primary monocytes fromperipheralblood blood
40 chr1:186647800-186648400 Active TSS Primary B cells from cord blood blood
41 chr1:186647800-186648600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:186647800-186648600 Flanking Active TSS Hela-S3 cervix
43 chr1:186647800-186648600 Transcr. at gene 5' and 3' NHEK skin
44 chr1:186647800-186651800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
45 chr1:186648000-186648200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr1:186648000-186648200 Active TSS Duodenum Mucosa Duodenum
47 chr1:186648000-186648200 Genic enhancers HMEC breast
48 chr1:186648000-186648200 Transcr. at gene 5' and 3' Osteobl bone
49 chr1:186648000-186651200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr1:186648000-186651600 Active TSS Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015