The 2.0 version of rSNPBase

Variant report

Variant rs3218623
Chromosome Location chr1:186645282-186645283
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186632800-186649000 Weak transcription Fetal Lung lung
2 chr1:186639400-186648400 Weak transcription Primary hematopoietic stem cells blood
3 chr1:186640200-186646600 Strong transcription Monocytes-CD14+_RO01746 blood
4 chr1:186640200-186647800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr1:186640200-186647800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:186640800-186647800 Strong transcription Primary monocytes fromperipheralblood blood
7 chr1:186640800-186648000 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:186640800-186648200 Weak transcription Brain Angular Gyrus brain
9 chr1:186640800-186649200 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:186641400-186645400 Strong transcription HUVEC blood vessel
11 chr1:186641400-186646000 Strong transcription NH-A brain
12 chr1:186641400-186647600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr1:186641600-186647400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr1:186641600-186648400 Weak transcription NHLF lung
15 chr1:186641800-186646400 Strong transcription Hela-S3 cervix
16 chr1:186641800-186648400 Weak transcription Fetal Muscle Trunk muscle
17 chr1:186642000-186646800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:186642200-186645600 Weak transcription Spleen Spleen
19 chr1:186642200-186647000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:186642200-186647800 Strong transcription HMEC breast
21 chr1:186642200-186649200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:186642200-186649200 Weak transcription Placenta Amnion Placenta Amnion
23 chr1:186642400-186645800 Strong transcription Colon Smooth Muscle Colon
24 chr1:186642400-186649200 Weak transcription Gastric stomach
25 chr1:186642600-186648200 Weak transcription Fetal Intestine Small intestine
26 chr1:186642800-186647800 Strong transcription NHEK skin
27 chr1:186643000-186647800 Weak transcription Fetal Intestine Large intestine
28 chr1:186643200-186646000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr1:186643400-186646400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr1:186643400-186647000 Strong transcription A549 lung
31 chr1:186643600-186645800 Strong transcription Primary hematopoietic stem cells short term culture blood
32 chr1:186643600-186645800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:186643600-186646800 Strong transcription Stomach Smooth Muscle stomach
34 chr1:186643600-186647000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr1:186643800-186645600 Weak transcription Left Ventricle heart
36 chr1:186644000-186647600 Strong transcription Duodenum Smooth Muscle Duodenum
37 chr1:186644000-186648400 Weak transcription Adipose Nuclei Adipose
38 chr1:186644200-186649000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr1:186644200-186649000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr1:186644200-186649000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr1:186644200-186649200 Weak transcription Lung lung
42 chr1:186644400-186648400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr1:186644400-186649000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr1:186644400-186649200 Weak transcription Aorta Aorta
45 chr1:186644600-186648200 Weak transcription Fetal Stomach stomach
46 chr1:186644600-186648800 Weak transcription Fetal Muscle Leg muscle
47 chr1:186644600-186649000 Weak transcription Ovary ovary
48 chr1:186645000-186645800 Genic enhancers Breast Myoepithelial Primary Cells Breast
49 chr1:186645000-186645800 Genic enhancers Primary neutrophils fromperipheralblood blood
50 chr1:186645000-186646000 Strong transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015