Variant report
Variant | rs74135000 |
---|---|
Chromosome Location | chr1:186775777-186775778 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:186648920..186649846-chr1:186775558..186776313,3 | MCF-7 | breast: | |
2 | chr1:186574767..186576085-chr1:186775295..186776491,7 | MCF-7 | breast: | |
3 | chr1:186451484..186452471-chr1:186775451..186776233,2 | MCF-7 | breast: | |
4 | chr1:186451520..186452510-chr1:186775360..186775901,2 | MCF-7 | breast: | |
5 | chr1:186691511..186692410-chr1:186775381..186776252,3 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000273129 | Chromatin interaction |
ENSG00000073756 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10752972 | 1.00[ASN][1000 genomes] |
rs12088741 | 1.00[ASN][1000 genomes] |
rs12738146 | 1.00[ASN][1000 genomes] |
rs1883272 | 1.00[ASN][1000 genomes] |
rs1997673 | 1.00[ASN][1000 genomes] |
rs2064132 | 1.00[ASN][1000 genomes] |
rs2066823 | 1.00[ASN][1000 genomes] |
rs2066824 | 1.00[ASN][1000 genomes] |
rs2205952 | 1.00[ASN][1000 genomes] |
rs3218622 | 1.00[ASN][1000 genomes] |
rs3218623 | 1.00[ASN][1000 genomes] |
rs3218624 | 1.00[ASN][1000 genomes] |
rs4140563 | 1.00[ASN][1000 genomes] |
rs4648257 | 1.00[ASN][1000 genomes] |
rs4648260 | 1.00[ASN][1000 genomes] |
rs4648262 | 1.00[ASN][1000 genomes] |
rs4648264 | 1.00[ASN][1000 genomes] |
rs4648265 | 1.00[ASN][1000 genomes] |
rs4648267 | 1.00[ASN][1000 genomes] |
rs4648296 | 1.00[ASN][1000 genomes] |
rs4648297 | 1.00[ASN][1000 genomes] |
rs4648299 | 1.00[ASN][1000 genomes] |
rs4651325 | 1.00[ASN][1000 genomes] |
rs5270 | 1.00[ASN][1000 genomes] |
rs5271 | 1.00[ASN][1000 genomes] |
rs5278 | 1.00[ASN][1000 genomes] |
rs55749947 | 1.00[ASN][1000 genomes] |
rs56118424 | 1.00[AMR][1000 genomes] |
rs56253891 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs57412622 | 1.00[ASN][1000 genomes] |
rs57684960 | 1.00[AMR][1000 genomes] |
rs61325483 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61403154 | 1.00[ASN][1000 genomes] |
rs66476634 | 1.00[ASN][1000 genomes] |
rs74134986 | 1.00[ASN][1000 genomes] |
rs74134987 | 1.00[ASN][1000 genomes] |
rs74134988 | 1.00[ASN][1000 genomes] |
rs74137506 | 1.00[ASN][1000 genomes] |
rs74137507 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs74137508 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs74137513 | 1.00[ASN][1000 genomes] |
rs7552522 | 1.00[ASN][1000 genomes] |
rs760707 | 1.00[ASN][1000 genomes] |
rs760708 | 1.00[ASN][1000 genomes] |
rs760709 | 1.00[ASN][1000 genomes] |
rs988905 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2762854 | chr1:186547101-186847574 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
2 | nsv872590 | chr1:186557453-187500338 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
3 | nsv466272 | chr1:186742947-186803226 | Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv548406 | chr1:186742947-186803226 | Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:186775000-186775800 | Enhancers | A549 | lung |
2 | chr1:186775600-186776000 | Enhancers | iPS-18 Cell Line | embryonic stem cell |