The 2.0 version of rSNPBase

Variant report

Variant rs2066824
Chromosome Location chr1:186648372-186648373
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186632800-186649000 Weak transcription Fetal Lung lung
2 chr1:186639400-186648400 Weak transcription Primary hematopoietic stem cells blood
3 chr1:186640800-186649200 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:186641600-186648400 Weak transcription NHLF lung
5 chr1:186641800-186648400 Weak transcription Fetal Muscle Trunk muscle
6 chr1:186642200-186649200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:186642200-186649200 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:186642400-186649200 Weak transcription Gastric stomach
9 chr1:186644000-186648400 Weak transcription Adipose Nuclei Adipose
10 chr1:186644200-186649000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:186644200-186649000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:186644200-186649000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:186644200-186649200 Weak transcription Lung lung
14 chr1:186644400-186648400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:186644400-186649000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
16 chr1:186644400-186649200 Weak transcription Aorta Aorta
17 chr1:186644600-186648800 Weak transcription Fetal Muscle Leg muscle
18 chr1:186644600-186649000 Weak transcription Ovary ovary
19 chr1:186645800-186648400 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr1:186645800-186649200 Weak transcription Spleen Spleen
21 chr1:186646400-186648400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:186646400-186651000 Active TSS Breast Myoepithelial Primary Cells Breast
23 chr1:186646800-186649200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:186647000-186652000 Active TSS Stomach Smooth Muscle stomach
25 chr1:186647600-186648400 Transcr. at gene 5' and 3' Duodenum Smooth Muscle Duodenum
26 chr1:186647600-186648600 Flanking Active TSS HUVEC blood vessel
27 chr1:186647600-186651000 Active TSS A549 lung
28 chr1:186647800-186648400 Genic enhancers Primary monocytes fromperipheralblood blood
29 chr1:186647800-186648400 Active TSS Primary B cells from cord blood blood
30 chr1:186647800-186648600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:186647800-186648600 Flanking Active TSS Hela-S3 cervix
32 chr1:186647800-186648600 Transcr. at gene 5' and 3' NHEK skin
33 chr1:186647800-186651800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
34 chr1:186648000-186651200 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr1:186648000-186651600 Active TSS Rectal Mucosa Donor 29 rectum
36 chr1:186648000-186651800 Active TSS Colon Smooth Muscle Colon
37 chr1:186648000-186651800 Active TSS NHDF-Ad bronchial
38 chr1:186648200-186648400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:186648200-186648400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr1:186648200-186648600 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr1:186648200-186648600 Transcr. at gene 5' and 3' Primary neutrophils fromperipheralblood blood
42 chr1:186648200-186648600 Transcr. at gene 5' and 3' Rectal Smooth Muscle rectum
43 chr1:186648200-186648600 Flanking Active TSS HMEC breast
44 chr1:186648200-186648600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
45 chr1:186648200-186648800 Weak transcription Duodenum Mucosa Duodenum
46 chr1:186648200-186649200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:186648200-186649400 Active TSS Brain Angular Gyrus brain
48 chr1:186648200-186650600 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:186648200-186651000 Active TSS Fetal Stomach stomach
50 chr1:186648200-186651000 Active TSS Osteobl bone

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015