Variant report

Variant	rs74137917
Chromosome Location	chr10:43146471-43146472
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43144345..43147006-chr21:15489906..15492564,2	K562	blood:
2	chr10:43144117..43146746-chr10:43147930..43151042,3	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10128322	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11239695	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11239707	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11239708	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11239709	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11239736	0.86[AFR][1000 genomes]
rs11239742	0.85[ASN][1000 genomes]
rs12240565	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12242735	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12245618	0.97[ASN][1000 genomes]
rs12247715	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250476	0.81[AFR][1000 genomes]
rs12253566	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12255541	0.83[AFR][1000 genomes]
rs12256744	0.98[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12256867	0.94[ASN][1000 genomes]
rs12260958	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261023	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12261168	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12262549	0.88[ASN][1000 genomes]
rs12262990	0.86[AFR][1000 genomes]
rs12265792	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12266387	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12268549	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413393	0.88[ASN][1000 genomes]
rs17157476	0.83[ASN][1000 genomes]
rs17157528	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17158029	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1830491	0.94[ASN][1000 genomes]
rs2297693	1.00[ASN][1000 genomes]
rs28404481	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs28454399	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28579832	0.86[AFR][1000 genomes]
rs55904273	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs55914715	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56355729	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57084246	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58635980	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs58877883	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs59127969	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60433789	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7069467	0.83[ASN][1000 genomes]
rs7071990	0.83[ASN][1000 genomes]
rs7078390	0.83[ASN][1000 genomes]
rs7079577	0.83[ASN][1000 genomes]
rs7082367	0.83[ASN][1000 genomes]
rs7097766	0.88[ASN][1000 genomes]
rs7100293	0.97[ASN][1000 genomes]
rs73266634	0.94[ASN][1000 genomes]
rs74137908	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs74137911	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs74137912	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs74137913	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs74137915	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74137918	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74137922	0.87[AFR][1000 genomes]
rs74137928	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs74137929	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7903632	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7904627	0.83[ASN][1000 genomes]
rs7906532	0.97[ASN][1000 genomes]
rs7910969	0.83[ASN][1000 genomes]
rs7912057	0.83[ASN][1000 genomes]
rs7916307	0.94[ASN][1000 genomes]
rs7919927	0.91[AFR][1000 genomes]
rs7921258	0.94[ASN][1000 genomes]
rs7921658	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
12	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
14	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
15	esv3350301	chr10:43140755-43150235	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43142600-43147000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:43142800-43147200	Weak transcription	Stomach Mucosa	stomach
3	chr10:43143000-43148600	Enhancers	K562	blood
4	chr10:43143400-43148200	Weak transcription	Fetal Kidney	kidney
5	chr10:43145400-43146600	Enhancers	HUVEC	blood vessel
6	chr10:43145400-43146800	Weak transcription	Pancreas	Pancrea
7	chr10:43146000-43148200	Enhancers	Fetal Intestine Small	intestine
8	chr10:43146000-43150400	Enhancers	Fetal Intestine Large	intestine
9	chr10:43146200-43147600	Weak transcription	HepG2	liver

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