Variant report

Variant	rs74137908
Chromosome Location	chr10:43094487-43094488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10128322	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10900251	0.84[EUR][1000 genomes]
rs10900253	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11239642	0.83[EUR][1000 genomes]
rs11239643	0.83[EUR][1000 genomes]
rs11239653	0.83[EUR][1000 genomes]
rs11239661	0.83[EUR][1000 genomes]
rs11239662	0.83[EUR][1000 genomes]
rs11239663	0.83[EUR][1000 genomes]
rs11239668	0.85[EUR][1000 genomes]
rs11239669	0.85[EUR][1000 genomes]
rs11239670	0.85[EUR][1000 genomes]
rs11239671	0.85[EUR][1000 genomes]
rs11239672	0.88[EUR][1000 genomes]
rs11239675	0.85[EUR][1000 genomes]
rs11239682	0.82[EUR][1000 genomes]
rs11239695	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11239707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11239708	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11239709	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11239742	0.85[AMR][1000 genomes]
rs11528472	0.84[EUR][1000 genomes]
rs11528550	0.81[EUR][1000 genomes]
rs11528552	0.83[EUR][1000 genomes]
rs12217930	0.85[EUR][1000 genomes]
rs12218051	0.82[EUR][1000 genomes]
rs12218419	0.83[EUR][1000 genomes]
rs12221072	0.83[EUR][1000 genomes]
rs12221408	0.84[EUR][1000 genomes]
rs12240565	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12242735	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12245618	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12247715	0.83[ASN][1000 genomes]
rs12255518	0.87[AFR][1000 genomes]
rs12256744	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12256867	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12259767	0.87[EUR][1000 genomes]
rs12260943	0.86[AFR][1000 genomes]
rs12260958	0.83[ASN][1000 genomes]
rs12261023	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12261168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262549	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12262782	0.86[AFR][1000 genomes]
rs12265792	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12266387	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12268051	0.82[AFR][1000 genomes]
rs12268549	0.83[ASN][1000 genomes]
rs12269593	0.83[AFR][1000 genomes]
rs12771775	0.82[EUR][1000 genomes]
rs1413393	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs158369	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs158379	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs158386	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17157474	0.82[EUR][1000 genomes]
rs17157476	1.00[ASN][1000 genomes]
rs17157513	0.94[ASN][1000 genomes]
rs17157528	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17158029	0.83[ASN][1000 genomes]
rs1830491	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1831910	0.88[EUR][1000 genomes]
rs1855448	0.82[EUR][1000 genomes]
rs1855449	0.82[EUR][1000 genomes]
rs2005977	0.85[EUR][1000 genomes]
rs2005978	0.85[EUR][1000 genomes]
rs2016696	0.87[EUR][1000 genomes]
rs209378	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs209379	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs209393	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2297693	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2419368	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28404481	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454399	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3740324	0.87[EUR][1000 genomes]
rs3740325	0.85[EUR][1000 genomes]
rs3740328	0.82[EUR][1000 genomes]
rs3758512	0.83[EUR][1000 genomes]
rs41301639	0.85[ASN][1000 genomes]
rs55904273	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55914715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56355729	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs57084246	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs58635980	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58877883	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60433789	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593371	0.83[EUR][1000 genomes]
rs6593413	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66635049	0.82[EUR][1000 genomes]
rs672073	0.89[EUR][1000 genomes]
rs672077	0.89[EUR][1000 genomes]
rs7069467	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069663	0.85[EUR][1000 genomes]
rs7071990	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075245	0.88[EUR][1000 genomes]
rs7076534	0.85[EUR][1000 genomes]
rs7078390	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079577	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079581	0.87[EUR][1000 genomes]
rs7082367	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083254	0.82[EUR][1000 genomes]
rs7085956	0.85[EUR][1000 genomes]
rs7097766	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7098574	0.85[EUR][1000 genomes]
rs7100293	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7100856	0.85[EUR][1000 genomes]
rs73260601	0.85[EUR][1000 genomes]
rs73262610	0.85[EUR][1000 genomes]
rs73262631	0.85[EUR][1000 genomes]
rs73266634	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74137906	0.86[AFR][1000 genomes]
rs74137907	0.86[AFR][1000 genomes]
rs74137910	0.86[AFR][1000 genomes]
rs74137911	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74137912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74137913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74137915	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs74137917	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs74137918	0.83[ASN][1000 genomes]
rs74137928	0.81[ASN][1000 genomes]
rs74137929	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7899665	0.82[EUR][1000 genomes]
rs7900972	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7903632	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7904627	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906532	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7910969	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912057	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914372	0.81[EUR][1000 genomes]
rs7916307	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7919880	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7920292	0.83[EUR][1000 genomes]
rs7920620	0.85[EUR][1000 genomes]
rs7921658	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
12	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	nsv975036	chr10:43090222-43132879	ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43077800-43109600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:43083000-43094800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
3	chr10:43085200-43096400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr10:43087000-43097000	Weak transcription	Fetal Stomach	stomach
5	chr10:43089600-43123600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:43089800-43098400	Weak transcription	Thymus	Thymus
7	chr10:43089800-43099800	Weak transcription	Brain Angular Gyrus	brain
8	chr10:43089800-43107600	Weak transcription	HepG2	liver
9	chr10:43089800-43126000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:43089800-43133000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:43089800-43133000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:43089800-43133000	Weak transcription	Right Ventricle	heart
13	chr10:43090000-43119200	Weak transcription	Brain Anterior Caudate	brain
14	chr10:43090000-43119200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:43090200-43108600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:43090400-43099200	Weak transcription	Placenta	Placenta
17	chr10:43090400-43107200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:43090400-43108000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:43090400-43118600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:43090600-43104800	Weak transcription	Hela-S3	cervix
21	chr10:43090600-43107200	Weak transcription	K562	blood
22	chr10:43090800-43096200	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:43090800-43133000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:43091000-43123800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:43091200-43096200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:43091200-43098800	Weak transcription	Brain Germinal Matrix	brain
27	chr10:43091200-43100200	Weak transcription	Fetal Brain Male	brain
28	chr10:43091200-43107800	Weak transcription	Fetal Thymus	thymus
29	chr10:43091200-43108800	Weak transcription	Adipose Nuclei	Adipose
30	chr10:43091200-43123600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:43091200-43126000	Weak transcription	Small Intestine	intestine
32	chr10:43091200-43132800	Weak transcription	Colon Smooth Muscle	Colon
33	chr10:43091400-43095800	Weak transcription	Dnd41	blood
34	chr10:43091400-43096400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:43091400-43096600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:43091400-43098000	Weak transcription	Fetal Lung	lung
37	chr10:43091400-43098600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:43091400-43099200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:43091400-43099200	Weak transcription	Fetal Brain Female	brain
40	chr10:43091400-43101200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:43091400-43101200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:43091400-43101400	Weak transcription	Ovary	ovary
43	chr10:43091400-43107600	Weak transcription	Psoas Muscle	Psoas
44	chr10:43091400-43108400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:43091400-43119600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:43091400-43132400	Weak transcription	HMEC	breast
47	chr10:43091400-43132800	Weak transcription	Colonic Mucosa	Colon
48	chr10:43091800-43107800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:43092400-43096600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr10:43093000-43095400	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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