Variant report

Variant	rs672073
Chromosome Location	chr10:43174089-43174090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43132462..43134955-chr10:43172627..43174472,2	MCF-7	breast:
2	chr10:43173150..43176514-chr10:43178445..43181832,3	K562	blood:

Variant related genes	Relation type
ENSG00000272373	Chromatin interaction
ENSG00000196693	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10128322	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10900251	0.84[EUR][1000 genomes]
rs10900253	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11239668	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11239669	0.81[EUR][1000 genomes]
rs11239670	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11239671	0.81[EUR][1000 genomes]
rs11239675	0.81[EUR][1000 genomes]
rs11239707	0.89[EUR][1000 genomes]
rs11239708	0.89[EUR][1000 genomes]
rs11239709	0.89[EUR][1000 genomes]
rs11239742	0.86[AMR][1000 genomes]
rs12217930	0.81[EUR][1000 genomes]
rs12240565	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12242735	0.89[EUR][1000 genomes]
rs12245618	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12256867	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12259767	0.88[EUR][1000 genomes]
rs12261023	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12261168	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12262549	0.92[EUR][1000 genomes]
rs12266387	0.89[EUR][1000 genomes]
rs1413393	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs158369	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158379	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158386	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1591248	1.00[CEU][hapmap]
rs17343205	0.88[CEU][hapmap]
rs17427443	0.85[CEU][hapmap]
rs17428442	0.87[CEU][hapmap]
rs1830491	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2005977	0.81[EUR][1000 genomes]
rs2005978	0.81[EUR][1000 genomes]
rs2016696	0.88[EUR][1000 genomes]
rs209378	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs209379	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs209393	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2297693	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2419368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28404481	0.89[EUR][1000 genomes]
rs3740324	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs3740325	0.81[EUR][1000 genomes]
rs3758512	1.00[CEU][hapmap]
rs3758513	1.00[CEU][hapmap]
rs55904273	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55914715	0.89[EUR][1000 genomes]
rs58635980	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58877883	0.89[EUR][1000 genomes]
rs60433789	0.89[EUR][1000 genomes]
rs6593413	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs672077	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068874	1.00[CEU][hapmap]
rs7069663	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7076534	0.81[EUR][1000 genomes]
rs7079581	0.88[EUR][1000 genomes]
rs7085956	0.81[EUR][1000 genomes]
rs7097766	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7098574	0.81[EUR][1000 genomes]
rs7100293	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73260601	0.81[EUR][1000 genomes]
rs73262610	0.81[EUR][1000 genomes]
rs73262631	0.81[EUR][1000 genomes]
rs73266634	0.94[EUR][1000 genomes]
rs74137908	0.89[EUR][1000 genomes]
rs74137911	0.89[EUR][1000 genomes]
rs74137912	0.89[EUR][1000 genomes]
rs74137913	0.89[EUR][1000 genomes]
rs74137929	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7900972	0.93[EUR][1000 genomes]
rs7903632	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7904627	0.94[EUR][1000 genomes]
rs7905834	0.88[CEU][hapmap]
rs7906532	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7910969	0.94[EUR][1000 genomes]
rs7916307	1.00[CEU][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7919880	0.94[EUR][1000 genomes]
rs7920292	0.89[CEU][hapmap]
rs7920620	0.81[EUR][1000 genomes]
rs7921258	0.84[EUR][1000 genomes]
rs9730806	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
11	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
12	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
13	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
14	nsv1046582	chr10:43167074-43214053	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43170400-43175800	Weak transcription	K562	blood

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