Variant report

Variant	rs3740328
Chromosome Location	chr10:43069841-43069842
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF33B-3	chr10:43069633-43070126	ENSG00000272373.1

Extended variants
information (count: 149 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10128322	0.87[CEU][hapmap]
rs10900251	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10900253	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11239616	0.84[EUR][1000 genomes]
rs11239617	0.83[EUR][1000 genomes]
rs11239618	0.81[EUR][1000 genomes]
rs11239639	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11239642	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11239643	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11239644	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239651	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11239653	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11239661	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11239662	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11239663	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11239668	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11239669	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11239670	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239671	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239672	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239675	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239682	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239707	0.82[EUR][1000 genomes]
rs11239709	0.82[EUR][1000 genomes]
rs1136118	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11528468	0.81[EUR][1000 genomes]
rs11528472	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11528550	0.85[EUR][1000 genomes]
rs11528552	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12217930	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12218051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218403	0.84[EUR][1000 genomes]
rs12218419	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12219232	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12219669	0.82[CHB][hapmap]
rs12221072	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12221408	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12240565	1.00[CEU][hapmap]
rs12242735	0.82[EUR][1000 genomes]
rs12256867	1.00[CEU][hapmap]
rs12259767	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12261023	1.00[CEU][hapmap]
rs12261168	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12266387	0.82[EUR][1000 genomes]
rs12771775	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413393	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs158369	0.82[EUR][1000 genomes]
rs158379	0.82[EUR][1000 genomes]
rs158386	0.80[EUR][1000 genomes]
rs1591248	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17157474	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17343205	0.88[CEU][hapmap]
rs17427443	0.85[CEU][hapmap]
rs17428442	0.87[CEU][hapmap]
rs1831910	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1831916	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1855448	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855449	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855451	0.84[EUR][1000 genomes]
rs2005977	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005978	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2016696	0.86[EUR][1000 genomes]
rs209378	0.82[EUR][1000 genomes]
rs2297693	1.00[CEU][hapmap]
rs2419368	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs28404481	0.82[EUR][1000 genomes]
rs3740324	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3740325	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740326	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs3740327	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758512	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3758513	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4262680	0.80[EUR][1000 genomes]
rs55914715	0.82[EUR][1000 genomes]
rs58877883	0.82[EUR][1000 genomes]
rs60433789	0.82[EUR][1000 genomes]
rs6593371	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6593413	0.82[EUR][1000 genomes]
rs66635049	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672073	1.00[CEU][hapmap]
rs7068874	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7069467	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7069663	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7071990	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7074806	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7075245	0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7076170	0.84[EUR][1000 genomes]
rs7076534	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7076624	0.84[EUR][1000 genomes]
rs7076787	0.84[EUR][1000 genomes]
rs7078390	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7079577	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079581	0.86[EUR][1000 genomes]
rs7082367	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7082480	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7083254	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085956	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7097153	0.84[EUR][1000 genomes]
rs7097299	0.84[EUR][1000 genomes]
rs7097766	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7098574	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7100293	0.81[EUR][1000 genomes]
rs7100856	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73256680	0.84[EUR][1000 genomes]
rs73256682	0.84[EUR][1000 genomes]
rs73256699	0.84[EUR][1000 genomes]
rs73260601	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73262610	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73262631	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266634	0.82[EUR][1000 genomes]
rs74137908	0.82[EUR][1000 genomes]
rs74137911	0.82[EUR][1000 genomes]
rs74137912	0.82[EUR][1000 genomes]
rs74137913	0.82[EUR][1000 genomes]
rs7476198	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7476285	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7899665	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900972	0.81[EUR][1000 genomes]
rs7903632	0.82[EUR][1000 genomes]
rs7904627	0.82[EUR][1000 genomes]
rs7905834	0.88[CEU][hapmap]
rs7910969	0.82[EUR][1000 genomes]
rs7911986	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7912057	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7914365	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7914372	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7916307	1.00[CEU][hapmap]
rs7917276	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7918447	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7919880	0.82[EUR][1000 genomes]
rs7920292	0.89[CEU][hapmap];0.82[CHB][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7920620	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7921571	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7921658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9730806	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817455	chr10:42607635-43151812	Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv550670	chr10:42725663-43089965	Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895064	chr10:42783481-43243325	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
9	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv469725	chr10:42965130-43178323	Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv482513	chr10:42965130-43178323	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
13	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
14	nsv948328	chr10:43062306-43070725	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3740328	ZNF33B	cis	Heart Left Ventricle	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43069600-43070000	Enhancers	Primary B cells from peripheral blood	blood

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