Variant report

Variant	rs74149250
Chromosome Location	chr10:93339535-93339536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93336246..93341378-chr10:93343790..93348157,8	K562	blood:
2	chr10:93338295..93340668-chr10:93348531..93350800,2	MCF-7	breast:
3	chr10:93337791..93340748-chr10:93344667..93347663,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74149252	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93324400-93341800	Weak transcription	Aorta	Aorta
2	chr10:93327800-93347400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:93333400-93339800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:93335000-93347600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:93336400-93341400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:93337200-93339600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:93337200-93340200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:93337400-93339800	Enhancers	Colon Smooth Muscle	Colon
9	chr10:93337400-93341600	Enhancers	Fetal Heart	heart
10	chr10:93337800-93341800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:93338000-93340200	Enhancers	HSMMtube	muscle
12	chr10:93338000-93341600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:93338200-93339800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:93338600-93339600	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:93338600-93339800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:93338600-93339800	Enhancers	Fetal Lung	lung
17	chr10:93338600-93339800	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:93338600-93340000	Enhancers	Fetal Stomach	stomach
19	chr10:93338600-93340000	Enhancers	Osteobl	bone
20	chr10:93338800-93339600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:93338800-93339600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:93338800-93339600	Enhancers	HSMM	muscle
23	chr10:93338800-93340000	Enhancers	NHDF-Ad	bronchial
24	chr10:93338800-93340000	Enhancers	NHEK	skin
25	chr10:93339000-93339800	Enhancers	Hela-S3	cervix
26	chr10:93339200-93339800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:93339400-93340000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:93339400-93340000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links