Variant report

Variant	rs74149256
Chromosome Location	chr10:93348560-93348561
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93342049..93343770-chr10:93347072..93349314,2	K562	blood:
2	chr10:93348429..93351278-chr10:93370659..93373317,2	K562	blood:
3	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
4	chr10:93346562..93349330-chr10:93365146..93366773,2	K562	blood:
5	chr10:93348105..93349991-chr10:93353710..93355230,2	MCF-7	breast:
6	chr10:93347598..93350963-chr10:93361481..93364970,4	K562	blood:
7	chr10:93348521..93350817-chr10:93361481..93363972,2	K562	blood:
8	chr10:75757594..75758345-chr10:93348053..93349045,2	Hela-S3	cervix:
9	chr10:93347325..93349831-chr10:93667659..93669319,2	K562	blood:
10	chr10:93343792..93345929-chr10:93347595..93350391,2	MCF-7	breast:
11	chr10:93338295..93340668-chr10:93348531..93350800,2	MCF-7	breast:
12	chr10:93347896..93349521-chr10:93352949..93355020,2	K562	blood:
13	chr10:93341976..93343770-chr10:93346348..93349314,3	K562	blood:
14	chr10:93347950..93349480-chr10:93389392..93391120,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000035403	Chromatin interaction
ENSG00000272817	Chromatin interaction
ENSG00000174721	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56035629	0.84[AFR][1000 genomes]
rs74149252	0.92[AFR][1000 genomes]
rs74149254	0.84[AFR][1000 genomes]
rs74149255	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93345200-93349800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:93345400-93348600	Enhancers	Fetal Heart	heart
3	chr10:93346400-93351400	Enhancers	Aorta	Aorta
4	chr10:93346600-93348600	Weak transcription	Left Ventricle	heart
5	chr10:93346600-93350600	Weak transcription	Brain Substantia Nigra	brain
6	chr10:93346800-93350400	Enhancers	Fetal Lung	lung
7	chr10:93346800-93352200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:93346800-93352400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:93346800-93354600	Enhancers	Fetal Muscle Leg	muscle
10	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:93347200-93351600	Enhancers	Psoas Muscle	Psoas
12	chr10:93347400-93348600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:93347400-93348600	Enhancers	Colon Smooth Muscle	Colon
14	chr10:93347400-93349200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:93347400-93349400	Enhancers	NHEK	skin
16	chr10:93347400-93350000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:93347400-93350600	Enhancers	HSMMtube	muscle
18	chr10:93347400-93351800	Flanking Active TSS	Hela-S3	cervix
19	chr10:93347400-93352200	Enhancers	HUVEC	blood vessel
20	chr10:93347400-93352600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:93347400-93352800	Enhancers	HSMM	muscle
22	chr10:93347400-93352800	Enhancers	NHLF	lung
23	chr10:93347400-93353400	Enhancers	Ovary	ovary
24	chr10:93347400-93353800	Enhancers	Pancreas	Pancrea
25	chr10:93347400-93354400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:93347600-93348600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr10:93347600-93348600	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr10:93347600-93348600	Flanking Active TSS	Osteobl	bone
29	chr10:93347600-93348800	Enhancers	HMEC	breast
30	chr10:93347600-93348800	Flanking Active TSS	NH-A	brain
31	chr10:93347600-93351000	Enhancers	Rectal Smooth Muscle	rectum
32	chr10:93347600-93351200	Enhancers	Right Ventricle	heart
33	chr10:93347600-93351800	Flanking Active TSS	A549	lung
34	chr10:93347600-93352600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:93347600-93353200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:93347600-93353400	Enhancers	Right Atrium	heart
37	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
38	chr10:93347800-93348600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:93347800-93348600	Weak transcription	Placenta	Placenta
40	chr10:93347800-93349200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:93348000-93348600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:93348000-93349000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:93348000-93351800	Enhancers	Brain Anterior Caudate	brain
44	chr10:93348200-93349000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr10:93348200-93350000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:93348200-93351400	Enhancers	Fetal Intestine Large	intestine
47	chr10:93348200-93351400	Enhancers	NHDF-Ad	bronchial
48	chr10:93348200-93351600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:93348200-93352000	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine

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