Variant report

Variant	rs74149310
Chromosome Location	chr10:93641211-93641212
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93638890..93643512-chr10:93665882..93670219,9	MCF-7	breast:
2	chr10:93639808..93641411-chr10:93659591..93661958,2	MCF-7	breast:
3	chr10:93638059..93641672-chr10:93681049..93683589,4	MCF-7	breast:
4	chr10:93638107..93642679-chr10:93666717..93670620,8	MCF-7	breast:
5	chr10:93620389..93623626-chr10:93637886..93641413,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs56001634	1.00[AMR][1000 genomes]
rs56078226	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56214670	1.00[AMR][1000 genomes]
rs56226527	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56327910	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56358636	1.00[AMR][1000 genomes]
rs56367452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56684777	1.00[AMR][1000 genomes]
rs57058393	1.00[AMR][1000 genomes]
rs57095232	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58926566	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59026711	1.00[AMR][1000 genomes]
rs61218533	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7096955	1.00[AMR][1000 genomes]
rs73312343	1.00[AMR][1000 genomes]
rs73314308	1.00[AMR][1000 genomes]
rs73323985	1.00[AMR][1000 genomes]
rs74149289	1.00[AMR][1000 genomes]
rs74149292	1.00[AMR][1000 genomes]
rs74149303	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149304	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149306	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151715	1.00[AMR][1000 genomes]
rs74151717	1.00[AMR][1000 genomes]
rs74151727	1.00[AMR][1000 genomes]
rs74151730	1.00[AMR][1000 genomes]
rs74151733	1.00[AMR][1000 genomes]
rs74151738	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151739	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151743	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151744	1.00[AMR][1000 genomes]
rs74151745	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151748	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1819110	chr10:93634155-93643195	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3445941	chr10:93641043-93641214	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93608800-93643400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93626200-93643000	Weak transcription	HSMMtube	muscle
3	chr10:93635000-93643200	Weak transcription	Right Atrium	heart
4	chr10:93639200-93641400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr10:93639200-93642200	Enhancers	Placenta	Placenta
6	chr10:93639400-93643200	Weak transcription	Brain Angular Gyrus	brain
7	chr10:93639800-93643000	Weak transcription	Fetal Heart	heart
8	chr10:93639800-93643200	Weak transcription	Esophagus	oesophagus
9	chr10:93639800-93643400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93640000-93643200	Weak transcription	Brain Anterior Caudate	brain
11	chr10:93640200-93641600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:93640200-93641600	Enhancers	Fetal Brain Female	brain
13	chr10:93640200-93643200	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:93640200-93643200	Weak transcription	Stomach Mucosa	stomach
15	chr10:93640200-93643400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:93640400-93643000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:93640400-93643000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:93640400-93643000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:93640400-93643000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:93640400-93643000	Weak transcription	NHDF-Ad	bronchial
21	chr10:93640400-93643200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:93640400-93643200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:93640400-93643200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:93640400-93643400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:93640400-93643400	Weak transcription	Brain Substantia Nigra	brain
26	chr10:93640600-93641400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:93640600-93642800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:93640600-93643000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:93640600-93643000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:93640600-93643000	Weak transcription	Adipose Nuclei	Adipose
31	chr10:93640600-93643000	Weak transcription	Fetal Brain Male	brain
32	chr10:93640600-93643200	Weak transcription	Aorta	Aorta
33	chr10:93640600-93643200	Weak transcription	Brain Germinal Matrix	brain
34	chr10:93640600-93644800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:93640800-93643000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:93640800-93643000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:93640800-93643400	Weak transcription	HMEC	breast
38	chr10:93641000-93641400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr10:93641000-93643000	Weak transcription	NHEK	skin
40	chr10:93641000-93643400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:93641200-93641400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:93641200-93641400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:93641200-93643200	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links