Variant report
| Variant | rs74151715 |
|---|---|
| Chromosome Location | chr10:93454945-93454946 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:93403175..93404161-chr10:93453640..93454972,7 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs56001634 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56035629 | 1.00[AMR][1000 genomes] |
| rs56078226 | 1.00[AMR][1000 genomes] |
| rs56214670 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56226527 | 1.00[AMR][1000 genomes] |
| rs56327910 | 1.00[AMR][1000 genomes] |
| rs56358636 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56367452 | 1.00[AMR][1000 genomes] |
| rs56684777 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57058393 | 1.00[AMR][1000 genomes] |
| rs57095232 | 1.00[AMR][1000 genomes] |
| rs58926566 | 1.00[AMR][1000 genomes] |
| rs59026711 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61218533 | 1.00[AMR][1000 genomes] |
| rs73312343 | 1.00[AMR][1000 genomes] |
| rs73323985 | 1.00[AMR][1000 genomes] |
| rs74149282 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74149289 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74149292 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74149303 | 1.00[AMR][1000 genomes] |
| rs74149304 | 1.00[AMR][1000 genomes] |
| rs74149306 | 1.00[AMR][1000 genomes] |
| rs74149308 | 1.00[AMR][1000 genomes] |
| rs74149309 | 1.00[AMR][1000 genomes] |
| rs74149310 | 1.00[AMR][1000 genomes] |
| rs74151717 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74151727 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74151730 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74151733 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74151738 | 1.00[AMR][1000 genomes] |
| rs74151739 | 1.00[AMR][1000 genomes] |
| rs74151743 | 1.00[AMR][1000 genomes] |
| rs74151744 | 1.00[AMR][1000 genomes] |
| rs74151745 | 1.00[AMR][1000 genomes] |
| rs74151748 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895892 | chr10:93432632-93470167 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:93454400-93459600 | Weak transcription | Liver | Liver |
