Variant report

Variant	rs74151708
Chromosome Location	chr10:93442433-93442434
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93439340..93443358-chr10:93444027..93446342,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59425998	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93427600-93448800	Weak transcription	Liver	Liver
4	chr10:93432400-93442800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:93439200-93444600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
7	chr10:93440000-93442600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:93440000-93443400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:93440000-93443400	Enhancers	NHEK	skin
10	chr10:93440000-93443600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:93440000-93444400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:93440600-93443600	Enhancers	NHDF-Ad	bronchial
13	chr10:93440600-93444600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:93440600-93445000	Enhancers	HMEC	breast
15	chr10:93441000-93442600	Enhancers	Fetal Heart	heart
16	chr10:93441200-93443400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:93441200-93445000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:93441600-93443400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
20	chr10:93441800-93442600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr10:93441800-93442800	Weak transcription	NHLF	lung
22	chr10:93441800-93443400	Weak transcription	NH-A	brain
23	chr10:93441800-93443600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:93442000-93443000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:93442000-93443200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:93442000-93443200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:93442000-93443200	Weak transcription	Osteobl	bone
28	chr10:93442000-93443400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:93442000-93443400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:93442000-93443400	Weak transcription	HSMM	muscle
31	chr10:93442000-93443600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr10:93442000-93443600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:93442000-93443600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:93442000-93443600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr10:93442000-93443600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:93442000-93444400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
38	chr10:93442200-93443200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:93442200-93443200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:93442200-93443400	Weak transcription	Brain Angular Gyrus	brain
41	chr10:93442200-93443600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:93442200-93443800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:93442400-93443600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:93442400-93446400	Weak transcription	Brain Anterior Caudate	brain
45	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links