Variant report

Variant	rs74153607
Chromosome Location	chr10:98018273-98018274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98011501..98013268-chr10:98017760..98019968,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12248659	1.00[EUR][1000 genomes]
rs1902710	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56951868	1.00[EUR][1000 genomes]
rs58051530	1.00[EUR][1000 genomes]
rs58536989	1.00[EUR][1000 genomes]
rs58969446	1.00[EUR][1000 genomes]
rs74153603	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74153608	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153609	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153613	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98005000-98019000	Weak transcription	Colonic Mucosa	Colon
3	chr10:98007200-98018800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:98010600-98025400	Weak transcription	Fetal Kidney	kidney
5	chr10:98011200-98018800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:98011200-98019000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:98014400-98027000	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr10:98015400-98026200	Genic enhancers	Primary B cells from cord blood	blood
9	chr10:98015600-98027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:98015800-98023200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:98015800-98026200	Weak transcription	Esophagus	oesophagus
12	chr10:98016000-98018600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:98016000-98018800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:98016000-98019200	Weak transcription	Placenta	Placenta
15	chr10:98016000-98023400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:98016400-98019800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:98016600-98018400	Enhancers	Liver	Liver
18	chr10:98016800-98018400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr10:98016800-98018400	Enhancers	Adipose Nuclei	Adipose
20	chr10:98016800-98018400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr10:98016800-98019000	Enhancers	Pancreas	Pancrea
22	chr10:98016800-98019000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
23	chr10:98016800-98019800	Enhancers	Spleen	Spleen
24	chr10:98017000-98019200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:98017000-98024400	Enhancers	Stomach Mucosa	stomach
26	chr10:98017400-98018400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:98017600-98019000	Weak transcription	Fetal Intestine Large	intestine
28	chr10:98017600-98019200	Genic enhancers	Fetal Intestine Small	intestine
29	chr10:98017800-98018400	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr10:98017800-98018800	Weak transcription	Lung	lung
31	chr10:98017800-98019000	Weak transcription	Left Ventricle	heart
32	chr10:98018000-98018600	Enhancers	Gastric	stomach
33	chr10:98018000-98019000	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:98018000-98019600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:98018000-98021600	Weak transcription	Right Atrium	heart
36	chr10:98018200-98018600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:98018200-98019600	Enhancers	Monocytes-CD14+_RO01746	blood

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