Variant report

Variant	rs74158042
Chromosome Location	chr10:116477210-116477211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116475010..116479006-chr10:116480936..116484073,4	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs45597633	0.81[EUR][1000 genomes]
rs7082625	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7090133	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7092035	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7093476	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7097959	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs74158038	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74158041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74158043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74158044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7894021	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7895690	0.81[EUR][1000 genomes]
rs7910860	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1042170	chr10:116455043-116504871	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1046888	chr10:116455043-116505640	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1038822	chr10:116455647-116497204	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116472600-116477400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:116473000-116478200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:116473600-116478800	Weak transcription	Fetal Intestine Large	intestine
4	chr10:116474200-116482800	Weak transcription	Brain Angular Gyrus	brain
5	chr10:116474400-116478200	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:116474400-116479000	Weak transcription	Pancreas	Pancrea
7	chr10:116474400-116479000	Weak transcription	Small Intestine	intestine
8	chr10:116474400-116480600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:116474400-116480800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:116474400-116482200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:116474400-116486200	Weak transcription	Lung	lung
12	chr10:116475000-116483400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:116475200-116477400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:116475200-116480400	Weak transcription	HSMMtube	muscle
15	chr10:116475400-116477400	Enhancers	A549	lung
16	chr10:116475400-116478200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:116475400-116478200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:116475400-116478400	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:116475400-116478600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:116475400-116479000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:116475400-116479000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:116475400-116480600	Weak transcription	Aorta	Aorta
23	chr10:116475400-116480800	Weak transcription	Gastric	stomach
24	chr10:116475600-116477400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:116475600-116484600	Enhancers	Adipose Nuclei	Adipose
26	chr10:116475800-116478400	Weak transcription	Brain Substantia Nigra	brain
27	chr10:116475800-116478800	Weak transcription	Stomach Mucosa	stomach
28	chr10:116475800-116479000	Weak transcription	Brain Anterior Caudate	brain
29	chr10:116475800-116479400	Enhancers	Hela-S3	cervix
30	chr10:116475800-116480200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:116475800-116480600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:116476000-116477400	Enhancers	Primary hematopoietic stem cells	blood
33	chr10:116476000-116477600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:116476200-116483200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:116476600-116484800	Enhancers	Liver	Liver
36	chr10:116476800-116477400	Enhancers	Right Ventricle	heart
37	chr10:116476800-116477600	Enhancers	Right Atrium	heart
38	chr10:116476800-116477800	Enhancers	Left Ventricle	heart
39	chr10:116476800-116479000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:116477000-116477400	Enhancers	NH-A	brain
41	chr10:116477000-116478200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr10:116477000-116479000	Weak transcription	Fetal Lung	lung
43	chr10:116477000-116479000	Weak transcription	Psoas Muscle	Psoas
44	chr10:116477200-116477400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr10:116477200-116477400	Flanking Active TSS	Fetal Heart	heart
46	chr10:116477200-116479000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr10:116477200-116480400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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