Variant report

Variant	rs742265
Chromosome Location	chr6:167153368-167153369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11752971	0.84[AMR][1000 genomes]
rs11753453	0.82[AMR][1000 genomes]
rs11964446	0.81[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs11964755	0.85[CEU][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16899333	0.92[JPT][hapmap]
rs17517640	0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1810469	0.81[TSI][hapmap]
rs3734600	0.93[CEU][hapmap];0.98[EUR][1000 genomes]
rs3734601	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456112	0.92[JPT][hapmap]
rs6456115	0.92[JPT][hapmap]
rs6456116	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456117	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6456118	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6456119	0.90[EUR][1000 genomes]
rs6456120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6910826	0.85[CEU][hapmap];0.92[JPT][hapmap]
rs6932950	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6942153	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs73051172	0.84[AMR][1000 genomes]
rs7738499	0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs7757799	0.81[TSI][hapmap]
rs7762526	0.90[EUR][1000 genomes]
rs7762789	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv1808159	chr6:167151463-167163093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv482525	chr6:167151805-167324406	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167136600-167157600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:167142800-167156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:167149600-167153400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:167149600-167153800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:167149600-167154000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:167149800-167153800	Enhancers	NHEK	skin
7	chr6:167149800-167155400	Enhancers	Fetal Stomach	stomach
8	chr6:167150400-167153400	Weak transcription	HSMMtube	muscle
9	chr6:167150600-167157000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:167151600-167153600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr6:167151800-167153600	Enhancers	Rectal Smooth Muscle	rectum
12	chr6:167151800-167153800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:167152200-167154600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:167152200-167155800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:167152200-167156000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:167152200-167157200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:167152400-167160800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:167152600-167154000	Enhancers	Colon Smooth Muscle	Colon
19	chr6:167152600-167157200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:167152800-167153600	Enhancers	Fetal Muscle Leg	muscle
21	chr6:167152800-167153600	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr6:167152800-167153800	Enhancers	HSMM	muscle
23	chr6:167152800-167154600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:167152800-167157600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:167153000-167153400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:167153000-167153600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:167153000-167153600	Enhancers	Lung	lung
28	chr6:167153000-167153800	Enhancers	Duodenum Mucosa	Duodenum
29	chr6:167153000-167153800	Enhancers	Placenta	Placenta
30	chr6:167153200-167153400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:167153200-167153600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:167153200-167153600	Enhancers	Fetal Muscle Trunk	muscle
33	chr6:167153200-167153800	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links