Variant report

Variant	rs7762789
Chromosome Location	chr6:167149090-167149091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167099352..167102037-chr6:167146508..167149347,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11964156	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11964446	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16899331	0.80[EUR][1000 genomes]
rs16899333	0.80[EUR][1000 genomes]
rs3734600	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3734601	0.89[EUR][1000 genomes]
rs6456112	0.80[EUR][1000 genomes]
rs6456114	0.82[EUR][1000 genomes]
rs6456115	0.80[EUR][1000 genomes]
rs6456116	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6456117	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6456118	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6456119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6456120	0.90[EUR][1000 genomes]
rs67162821	0.81[EUR][1000 genomes]
rs6932950	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6933260	0.80[EUR][1000 genomes]
rs6942153	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs742265	0.90[EUR][1000 genomes]
rs7738499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7750004	0.82[EUR][1000 genomes]
rs7750221	0.80[EUR][1000 genomes]
rs7751129	0.80[EUR][1000 genomes]
rs7762526	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482478	chr6:167071366-167265821	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167136600-167157600	Weak transcription	Brain Angular Gyrus	brain
2	chr6:167142600-167149200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:167142800-167153000	Weak transcription	Lung	lung
4	chr6:167142800-167156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:167143000-167150400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:167143200-167152800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:167146400-167151800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:167147600-167153200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:167147800-167149800	Weak transcription	NHEK	skin
10	chr6:167147800-167150600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:167147800-167153000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:167148000-167149600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:167148000-167149600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:167148000-167149800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:167148200-167149600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:167148200-167149800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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