Variant report

Variant	rs7426821
Chromosome Location	chr3:156598710-156598711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11927500	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13321802	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16826858	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826864	0.84[ASN][1000 genomes]
rs16826899	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16826906	0.95[ASN][1000 genomes]
rs171080	0.84[ASN][1000 genomes]
rs2633815	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2653817	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28661978	0.84[ASN][1000 genomes]
rs2874490	0.89[ASN][1000 genomes]
rs2874491	0.95[ASN][1000 genomes]
rs344074	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs344076	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs344077	0.84[ASN][1000 genomes]
rs344078	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs344081	0.84[ASN][1000 genomes]
rs344083	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs344085	0.84[ASN][1000 genomes]
rs344086	0.84[ASN][1000 genomes]
rs344088	0.84[ASN][1000 genomes]
rs344089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs344090	0.84[ASN][1000 genomes]
rs344091	0.84[ASN][1000 genomes]
rs344092	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs344093	0.83[AMR][1000 genomes]
rs414683	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4441614	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs491423	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55850252	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58207863	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59244547	0.84[ASN][1000 genomes]
rs6441099	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6441100	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441103	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6763644	0.89[ASN][1000 genomes]
rs6774702	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6786167	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6787535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787952	1.00[ASN][1000 genomes]
rs6792917	0.89[ASN][1000 genomes]
rs6795327	0.95[ASN][1000 genomes]
rs6795516	0.95[ASN][1000 genomes]
rs6802042	0.95[ASN][1000 genomes]
rs7609851	0.95[ASN][1000 genomes]
rs7621699	0.95[ASN][1000 genomes]
rs7630909	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635521	0.95[ASN][1000 genomes]
rs7640994	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7650127	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9810194	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841269	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9861359	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9878709	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7426821	LINC00886	cis	Artery Tibial	GTEx
rs7426821	LEKR1	cis	Thyroid	GTEx
rs7426821	LINC00886	cis	Artery Aorta	GTEx
rs7426821	LEKR1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156598200-156609600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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