Variant report

Variant	rs7621699
Chromosome Location	chr3:156647767-156647768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156646088..156648107-chr3:156651326..156653714,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11927500	0.84[ASN][1000 genomes]
rs13321802	0.90[ASN][1000 genomes]
rs16826858	0.84[ASN][1000 genomes]
rs16826864	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16826899	0.95[ASN][1000 genomes]
rs16826906	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16826948	1.00[CEU][hapmap]
rs171080	1.00[CEU][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1995425	0.81[YRI][hapmap]
rs2321455	0.81[YRI][hapmap]
rs2633815	0.84[ASN][1000 genomes]
rs28661978	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2874490	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2874491	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2874495	0.81[YRI][hapmap]
rs343992	1.00[CEU][hapmap]
rs344076	0.89[ASN][1000 genomes]
rs344077	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344078	0.89[ASN][1000 genomes]
rs344081	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344083	0.89[ASN][1000 genomes]
rs344085	0.89[CEU][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344086	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344088	0.89[CEU][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344090	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344091	1.00[CEU][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs344092	0.84[ASN][1000 genomes]
rs414683	0.84[ASN][1000 genomes]
rs4441614	0.95[ASN][1000 genomes]
rs491423	0.84[ASN][1000 genomes]
rs55850252	0.95[ASN][1000 genomes]
rs58207863	0.95[ASN][1000 genomes]
rs59244547	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441099	0.84[ASN][1000 genomes]
rs6441100	0.84[ASN][1000 genomes]
rs6441103	1.00[ASN][1000 genomes]
rs6441104	1.00[CEU][hapmap]
rs6763233	1.00[CEU][hapmap]
rs6763644	0.95[ASN][1000 genomes]
rs6774702	0.95[ASN][1000 genomes]
rs6786167	0.95[ASN][1000 genomes]
rs6787535	0.95[ASN][1000 genomes]
rs6787952	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6792917	0.95[ASN][1000 genomes]
rs6795327	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795516	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802042	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802511	1.00[CEU][hapmap]
rs6803064	0.81[YRI][hapmap]
rs7426821	0.95[ASN][1000 genomes]
rs7609851	0.88[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7615304	0.86[YRI][hapmap]
rs7630909	0.84[ASN][1000 genomes]
rs7635521	1.00[ASN][1000 genomes]
rs7640994	1.00[ASN][1000 genomes]
rs7650127	1.00[ASN][1000 genomes]
rs9810194	0.95[ASN][1000 genomes]
rs9814813	0.86[YRI][hapmap]
rs9841269	0.95[ASN][1000 genomes]
rs9861359	0.84[ASN][1000 genomes]
rs987724	0.86[YRI][hapmap]
rs9878709	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv592120	chr3:156626091-156691604	Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156646600-156652600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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