Variant report

Variant	rs7429072
Chromosome Location	chr3:100208737-100208738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:100203629..100205546-chr3:100208727..100210663,2	MCF-7	breast:
2	chr3:100207350..100209197-chr3:100209386..100212217,2	MCF-7	breast:
3	chr3:100120020..100122994-chr3:100208186..100210506,3	K562	blood:

Variant related genes	Relation type
ENSG00000206535	Chromatin interaction
ENSG00000154174	Chromatin interaction
ENSG00000181458	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11923942	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11927516	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12631075	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12634371	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12636805	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12639465	0.89[EUR][1000 genomes]
rs4928097	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57018910	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59299896	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60071944	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60272820	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61636409	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62276517	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62276520	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62276521	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62276522	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62276523	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62276526	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62276556	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62276559	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66791174	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67600559	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6763079	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6763178	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67774605	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6798264	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73152126	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7429277	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7429604	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7430698	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7430715	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7431846	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7616839	0.84[ASN][1000 genomes]
rs7640470	0.94[ASN][1000 genomes]
rs9851429	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7429072	TMEM45A	cis	Whole Blood	GTEx
rs7429072	TMEM45A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100205000-100210400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100205000-100210800	Weak transcription	K562	blood
3	chr3:100206600-100210600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:100208600-100208800	Enhancers	Primary neutrophils fromperipheralblood	blood

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