Variant report

Variant	rs7429516
Chromosome Location	chr3:136583687-136583688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:136583214..136585739-chr3:136588131..136591435,3	K562	blood:
2	chr3:136580843..136582615-chr3:136582882..136586674,6	MCF-7	breast:
3	chr3:136583020..136585823-chr3:136647471..136649175,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158092	Chromatin interaction
ENSG00000239213	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12330283	0.81[AFR][1000 genomes]
rs1805300	0.82[AFR][1000 genomes]
rs1865149	0.81[AFR][1000 genomes]
rs2060303	0.85[AFR][1000 genomes]
rs2117010	0.81[AFR][1000 genomes]
rs2880767	0.81[AFR][1000 genomes]
rs4678448	0.82[AFR][1000 genomes]
rs6439670	0.81[AFR][1000 genomes]
rs6439671	0.84[AFR][1000 genomes]
rs6439672	0.82[AFR][1000 genomes]
rs6439673	0.81[AFR][1000 genomes]
rs6766755	0.81[AFR][1000 genomes]
rs6777816	0.86[AFR][1000 genomes]
rs7649211	0.82[AFR][1000 genomes]
rs938525	0.82[AFR][1000 genomes]
rs9817132	0.82[AFR][1000 genomes]
rs9817453	0.84[AFR][1000 genomes]
rs9819804	0.82[AFR][1000 genomes]
rs9827648	0.84[AFR][1000 genomes]
rs9834861	0.81[AFR][1000 genomes]
rs9836807	0.82[AFR][1000 genomes]
rs9865545	0.81[AFR][1000 genomes]
rs9883108	0.81[AFR][1000 genomes]
rs9883131	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877530	chr3:136514310-136604697	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
2	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv877533	chr3:136539689-136662954	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136582000-136587800	Weak transcription	Lung	lung
2	chr3:136582000-136591400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:136582000-136591400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:136582000-136592600	Weak transcription	Gastric	stomach
5	chr3:136582000-136601400	Weak transcription	Spleen	Spleen
6	chr3:136582200-136585400	Weak transcription	Ovary	ovary
7	chr3:136582200-136591400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:136582200-136591400	Weak transcription	Left Ventricle	heart
9	chr3:136582200-136594000	Weak transcription	Esophagus	oesophagus
10	chr3:136582400-136585200	Weak transcription	Psoas Muscle	Psoas
11	chr3:136582400-136586800	Weak transcription	Fetal Intestine Large	intestine
12	chr3:136582400-136587800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:136582400-136590800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:136582400-136590800	Weak transcription	Right Atrium	heart
15	chr3:136582400-136591400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:136582400-136593000	Weak transcription	Right Ventricle	heart
17	chr3:136582400-136594600	Weak transcription	Colonic Mucosa	Colon
18	chr3:136582400-136602600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:136582400-136612600	Weak transcription	Pancreas	Pancrea
20	chr3:136582600-136584600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:136582600-136584600	Weak transcription	Primary T cells from cord blood	blood
22	chr3:136582600-136584600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:136582600-136586200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:136582600-136586200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:136582600-136586200	Weak transcription	K562	blood
26	chr3:136582600-136586400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:136582600-136586400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:136582600-136586600	Weak transcription	Adipose Nuclei	Adipose
29	chr3:136582600-136586600	Weak transcription	Fetal Muscle Leg	muscle
30	chr3:136582600-136586800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:136582600-136586800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:136582600-136587000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:136582600-136587000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:136582600-136587000	Weak transcription	Fetal Brain Female	brain
35	chr3:136582600-136587000	Weak transcription	Fetal Stomach	stomach
36	chr3:136582600-136587200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:136582600-136587400	Weak transcription	Fetal Intestine Small	intestine
38	chr3:136582600-136587400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:136582600-136587600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:136582600-136587600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:136582600-136587800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:136582600-136588000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:136582600-136589400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:136582600-136590000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr3:136582600-136590000	Weak transcription	NHDF-Ad	bronchial
46	chr3:136582600-136590400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:136582600-136590400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr3:136582600-136590400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:136582600-136591400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr3:136582600-136591400	Weak transcription	Aorta	Aorta

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