Variant report

Variant	rs7431177
Chromosome Location	chr3:68088593-68088594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1345174	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs1349005	0.81[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs1374837	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1447755	0.81[EUR][1000 genomes]
rs4572789	0.92[JPT][hapmap]
rs4856812	0.92[JPT][hapmap]
rs4856813	0.92[JPT][hapmap]
rs6548935	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs6792324	0.91[CHB][hapmap]
rs6792729	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6793147	0.83[EUR][1000 genomes]
rs6808653	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs7429717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs9812127	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs9818541	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs9857691	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs9874728	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap]
rs9881594	0.91[CEU][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1010231	chr3:67894825-68117879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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