Variant report

Variant	rs9881594
Chromosome Location	chr3:68090341-68090342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12497186	0.87[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.87[TSI][hapmap]
rs13100924	0.83[ASW][hapmap];0.87[CEU][hapmap];0.92[GIH][hapmap];0.94[MEX][hapmap];0.84[MKK][hapmap];0.85[TSI][hapmap]
rs1345174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1374837	0.82[CEU][hapmap]
rs7373042	0.87[CEU][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs7429717	0.91[CEU][hapmap];0.92[JPT][hapmap]
rs7430276	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs7431117	0.87[CEU][hapmap]
rs7431177	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs7625708	0.87[CEU][hapmap]
rs7632136	0.87[CEU][hapmap]
rs9812127	0.82[CEU][hapmap]
rs9818541	0.82[CEU][hapmap]
rs9869498	0.87[CEU][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs9874728	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1010231	chr3:67894825-68117879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9881594	LRIG1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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