Variant report

Variant	rs7431844
Chromosome Location	chr3:161733830-161733831
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10470481	1.00[ASN][1000 genomes]
rs10513577	1.00[ASN][1000 genomes]
rs11716576	1.00[ASN][1000 genomes]
rs12374003	1.00[ASN][1000 genomes]
rs12374105	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13317077	1.00[ASN][1000 genomes]
rs13319565	1.00[ASN][1000 genomes]
rs13323724	1.00[ASN][1000 genomes]
rs13323875	1.00[ASN][1000 genomes]
rs1510338	1.00[ASN][1000 genomes]
rs16834194	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2068396	0.82[AFR][1000 genomes]
rs2136713	1.00[ASN][1000 genomes]
rs2175264	1.00[ASN][1000 genomes]
rs34264430	1.00[ASN][1000 genomes]
rs34497191	1.00[ASN][1000 genomes]
rs34640718	1.00[ASN][1000 genomes]
rs34834722	1.00[ASN][1000 genomes]
rs4133847	1.00[ASN][1000 genomes]
rs4295178	1.00[ASN][1000 genomes]
rs4333098	1.00[ASN][1000 genomes]
rs4494944	1.00[ASN][1000 genomes]
rs4594629	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278898	1.00[ASN][1000 genomes]
rs62280492	1.00[ASN][1000 genomes]
rs73875980	0.80[AFR][1000 genomes]
rs9290107	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961839	1.00[ASN][1000 genomes]
rs961840	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812268	1.00[ASN][1000 genomes]
rs9822058	1.00[ASN][1000 genomes]
rs9826521	1.00[ASN][1000 genomes]
rs9827385	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834707	1.00[ASN][1000 genomes]
rs9842798	1.00[ASN][1000 genomes]
rs9848787	1.00[ASN][1000 genomes]
rs9849367	1.00[ASN][1000 genomes]
rs9850365	1.00[ASN][1000 genomes]
rs9850613	1.00[ASN][1000 genomes]
rs9855315	1.00[ASN][1000 genomes]
rs9862898	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161733400-161734000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:161733600-161737600	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:161733800-161734000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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