Variant report

Variant	rs9290107
Chromosome Location	chr3:161739777-161739778
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161726576..161728684-chr3:161737243..161740058,2	MCF-7	breast:
2	chr3:161739398..161741171-chr3:161742842..161744517,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10470481	1.00[ASN][1000 genomes]
rs10513577	1.00[ASN][1000 genomes]
rs11716576	1.00[ASN][1000 genomes]
rs12374003	1.00[ASN][1000 genomes]
rs12374105	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13317077	1.00[ASN][1000 genomes]
rs13319565	1.00[ASN][1000 genomes]
rs13323724	1.00[ASN][1000 genomes]
rs13323875	1.00[ASN][1000 genomes]
rs1510338	1.00[ASN][1000 genomes]
rs16834194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2136713	1.00[ASN][1000 genomes]
rs2175264	1.00[ASN][1000 genomes]
rs34264430	1.00[ASN][1000 genomes]
rs34497191	1.00[ASN][1000 genomes]
rs34640718	1.00[ASN][1000 genomes]
rs34834722	1.00[ASN][1000 genomes]
rs4133847	1.00[ASN][1000 genomes]
rs4295178	1.00[ASN][1000 genomes]
rs4333098	1.00[ASN][1000 genomes]
rs4494944	1.00[ASN][1000 genomes]
rs4594629	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278898	1.00[ASN][1000 genomes]
rs62280492	1.00[ASN][1000 genomes]
rs7431844	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961839	1.00[ASN][1000 genomes]
rs961840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812268	1.00[ASN][1000 genomes]
rs9822058	1.00[ASN][1000 genomes]
rs9826521	1.00[ASN][1000 genomes]
rs9827385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834707	1.00[ASN][1000 genomes]
rs9842798	1.00[ASN][1000 genomes]
rs9848787	1.00[ASN][1000 genomes]
rs9849367	1.00[ASN][1000 genomes]
rs9850365	1.00[ASN][1000 genomes]
rs9850613	1.00[ASN][1000 genomes]
rs9855315	1.00[ASN][1000 genomes]
rs9862898	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161738000-161740200	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:161738000-161740400	Weak transcription	Brain Anterior Caudate	brain
3	chr3:161738000-161741400	Weak transcription	Brain Germinal Matrix	brain
4	chr3:161738200-161740400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:161738400-161740800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:161738600-161740400	Weak transcription	Brain Substantia Nigra	brain

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