Variant report

Variant	rs7433606
Chromosome Location	chr3:150339161-150339162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150334636..150336342-chr3:150338570..150340456,2	K562	blood:
2	chr3:150337611..150339183-chr3:150352159..150354463,2	K562	blood:
3	chr3:150334636..150336342-chr3:150338385..150340456,3	K562	blood:
4	chr3:150334750..150337026-chr3:150339148..150342071,3	MCF-7	breast:
5	chr3:150321297..150323112-chr3:150338077..150339606,2	MCF-7	breast:
6	chr3:150336339..150339274-chr3:150349708..150351395,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1133494	0.86[CEU][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[EUR][1000 genomes]
rs13097283	0.94[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1464517	0.94[ASW][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1915943	1.00[CEU][hapmap];0.86[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2049229	0.80[LWK][hapmap];0.89[YRI][hapmap]
rs2204112	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6779448	0.80[AFR][1000 genomes]
rs6798173	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6801796	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7638500	0.80[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs7642917	0.86[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9809820	1.00[CEU][hapmap];0.86[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9819287	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9836797	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9842446	0.83[EUR][1000 genomes]
rs9874800	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150322200-150347000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:150322400-150344000	Weak transcription	HSMMtube	muscle
3	chr3:150322400-150350800	Weak transcription	Colonic Mucosa	Colon
4	chr3:150322400-150353000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:150322800-150341200	Weak transcription	HSMM	muscle
6	chr3:150323000-150341200	Weak transcription	Adipose Nuclei	Adipose
7	chr3:150323000-150343800	Weak transcription	HMEC	breast
8	chr3:150323000-150348200	Weak transcription	Fetal Brain Male	brain
9	chr3:150323000-150348200	Weak transcription	Fetal Lung	lung
10	chr3:150323800-150341000	Weak transcription	A549	lung
11	chr3:150324000-150341600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:150324200-150342400	Weak transcription	NHDF-Ad	bronchial
13	chr3:150325600-150339400	Weak transcription	Hela-S3	cervix
14	chr3:150325600-150342400	Weak transcription	NHLF	lung
15	chr3:150325600-150342600	Weak transcription	Brain Substantia Nigra	brain
16	chr3:150325600-150348400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:150325800-150342400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:150325800-150344200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:150326000-150343800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:150326000-150348400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:150326000-150352800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:150326400-150339400	Weak transcription	HepG2	liver
23	chr3:150326600-150343800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:150326800-150343000	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:150326800-150344200	Weak transcription	Fetal Brain Female	brain
26	chr3:150327400-150343200	Weak transcription	Left Ventricle	heart
27	chr3:150327600-150343800	Weak transcription	Small Intestine	intestine
28	chr3:150328200-150343800	Weak transcription	Aorta	Aorta
29	chr3:150328600-150344200	Weak transcription	Fetal Heart	heart
30	chr3:150328800-150340200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:150328800-150340600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:150328800-150340800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:150328800-150342600	Weak transcription	Liver	Liver
34	chr3:150328800-150343000	Weak transcription	Brain Anterior Caudate	brain
35	chr3:150328800-150343600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr3:150328800-150343800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:150329200-150341600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr3:150329800-150343600	Weak transcription	Pancreas	Pancrea
39	chr3:150329800-150344200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:150330000-150342800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:150330000-150343000	Weak transcription	Thymus	Thymus
42	chr3:150330000-150343200	Weak transcription	Spleen	Spleen
43	chr3:150330000-150343800	Weak transcription	Lung	lung
44	chr3:150330000-150348800	Weak transcription	Right Ventricle	heart
45	chr3:150330000-150356600	Weak transcription	Gastric	stomach
46	chr3:150330200-150343000	Weak transcription	Fetal Intestine Large	intestine
47	chr3:150330200-150343800	Weak transcription	Esophagus	oesophagus
48	chr3:150330200-150343800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr3:150330200-150348800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:150330200-150353000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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