Variant report

Variant	rs9874800
Chromosome Location	chr3:150348974-150348975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150341329..150343793-chr3:150348325..150350105,2	K562	blood:
2	chr3:150348263..150349898-chr3:150352645..150354743,2	MCF-7	breast:
3	chr3:150344657..150347159-chr3:150348662..150351460,3	K562	blood:
4	chr3:150340005..150343317-chr3:150348325..150351775,4	K562	blood:

Variant related genes	Relation type
ENSG00000198843	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13097283	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1464517	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1915943	0.81[EUR][1000 genomes]
rs2049229	0.93[EUR][1000 genomes]
rs2204112	0.81[EUR][1000 genomes]
rs2868947	0.93[EUR][1000 genomes]
rs6798173	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6801796	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7433606	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9809820	0.80[EUR][1000 genomes]
rs9819287	0.81[EUR][1000 genomes]
rs9836797	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9874800	EIF2A	cis	Artery Tibial	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150322400-150350800	Weak transcription	Colonic Mucosa	Colon
2	chr3:150322400-150353000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:150326000-150352800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:150330000-150356600	Weak transcription	Gastric	stomach
5	chr3:150330200-150353000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:150334800-150352800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:150336600-150351200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:150339800-150353000	Weak transcription	HepG2	liver
9	chr3:150340600-150349600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr3:150340800-150349800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr3:150341000-150349400	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:150341000-150349800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:150341200-150349000	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:150341200-150349000	Strong transcription	Adipose Nuclei	Adipose
15	chr3:150341200-150349800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:150341200-150350000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr3:150341600-150349600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:150341800-150349000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:150341800-150349400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:150341800-150349600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:150341800-150349600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:150341800-150349800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:150341800-150349800	Strong transcription	Placenta	Placenta
24	chr3:150341800-150349800	Strong transcription	Fetal Thymus	thymus
25	chr3:150342000-150349600	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:150342400-150349800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr3:150342400-150349800	Strong transcription	Dnd41	blood
28	chr3:150342400-150350000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:150342600-150349800	Strong transcription	Liver	Liver
30	chr3:150342600-150353200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr3:150342800-150349400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:150343800-150349800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:150344200-150351400	Weak transcription	Pancreas	Pancrea
34	chr3:150344400-150352800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:150344400-150353800	Weak transcription	Brain Angular Gyrus	brain
36	chr3:150344600-150350400	Weak transcription	HSMMtube	muscle
37	chr3:150344600-150352200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:150344600-150353200	Weak transcription	Brain Germinal Matrix	brain
39	chr3:150344800-150353000	Weak transcription	Psoas Muscle	Psoas
40	chr3:150344800-150353200	Weak transcription	Colon Smooth Muscle	Colon
41	chr3:150345000-150352800	Weak transcription	Brain Substantia Nigra	brain
42	chr3:150345000-150353000	Weak transcription	Small Intestine	intestine
43	chr3:150345000-150354000	Weak transcription	Esophagus	oesophagus
44	chr3:150345200-150349000	Weak transcription	Brain Hippocampus Middle	brain
45	chr3:150345200-150350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:150345200-150353000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr3:150345600-150351400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:150345600-150352600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:150345600-150352800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr3:150345600-150352800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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