Variant report

Variant	rs7440009
Chromosome Location	chr4:110734363-110734364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr4:110734146-110734503	K562	blood:	n/a	n/a
2	SPI1	chr4:110734312-110734874	HL-60	blood:	n/a	n/a
3	RCOR1	chr4:110733866-110734554	K562	blood:	n/a	n/a
4	MAX	chr4:110734045-110734489	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:110622109..110625008-chr4:110733953..110738254,7	MCF-7	breast:
2	chr4:110648642..110653205-chr4:110733223..110738599,11	K562	blood:
3	chr4:110733962..110737774-chr4:110769396..110773000,3	K562	blood:
4	chr4:110353100..110355192-chr4:110733250..110735765,3	MCF-7	breast:
5	chr4:110648895..110652104-chr4:110733858..110738186,8	K562	blood:
6	chr4:110667719..110670763-chr4:110732852..110735332,3	K562	blood:
7	chr4:110635477..110637469-chr4:110733651..110735877,2	K562	blood:
8	chr4:110733952..110736474-chr4:110747791..110750074,2	MCF-7	breast:
9	chr4:110667959..110670763-chr4:110732852..110734375,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GAR1-1	chr4:110733979-110734837	NONHSAT097795

No data

Variant related genes	Relation type
GAR1	TF binding region
ENSG00000138802	Chromatin interaction
ENSG00000180245	Chromatin interaction
ENSG00000247950	Chromatin interaction
ENSG00000183423	Chromatin interaction
ENSG00000123739	Chromatin interaction
ENSG00000138794	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11098046	0.84[AMR][1000 genomes]
rs11721403	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4299581	0.89[AMR][1000 genomes]
rs4541508	0.81[ASN][1000 genomes]
rs4698790	0.88[AMR][1000 genomes]
rs6533457	0.81[ASN][1000 genomes]
rs6841303	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671905	0.83[AMR][1000 genomes]
rs7675460	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110722600-110736200	Weak transcription	Pancreas	Pancrea
2	chr4:110722800-110735800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:110724400-110735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:110732200-110735800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:110732200-110735800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:110732200-110736000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:110732200-110736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:110732400-110735800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:110732400-110735800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:110732400-110735800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:110732400-110735800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:110732400-110736000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:110732400-110736200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:110732600-110735800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:110732600-110735800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:110732800-110736000	Weak transcription	Aorta	Aorta
17	chr4:110733000-110735400	Enhancers	K562	blood
18	chr4:110733000-110735800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:110734200-110735800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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