Variant report

Variant	rs7671905
Chromosome Location	chr4:110722886-110722887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110721548..110724346-chr4:110736767..110738481,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109534	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1000954	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10016598	0.87[EUR][1000 genomes]
rs10049804	0.84[EUR][1000 genomes]
rs10857001	0.86[EUR][1000 genomes]
rs11098046	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11726234	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12498247	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12499926	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12506605	0.89[EUR][1000 genomes]
rs12508074	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12512308	0.86[EUR][1000 genomes]
rs17040826	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs2298749	0.87[ASN][1000 genomes]
rs28880991	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3822272	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs4299581	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4339213	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4371619	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4600912	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4698790	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4698792	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62324937	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6815517	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6841303	0.85[AMR][1000 genomes]
rs72674894	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72674895	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72674896	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7356506	0.84[CHB][hapmap];0.87[ASN][1000 genomes]
rs7440009	0.83[AMR][1000 genomes]
rs7659870	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9647471	0.87[ASN][1000 genomes]
rs9654197	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110721400-110723600	Active TSS	Liver	Liver
2	chr4:110721600-110723400	Active TSS	Fetal Intestine Large	intestine
3	chr4:110721600-110723400	Active TSS	Fetal Intestine Small	intestine
4	chr4:110721600-110723400	Active TSS	Right Atrium	heart
5	chr4:110721800-110723400	Active TSS	Ovary	ovary
6	chr4:110721800-110723400	Active TSS	HepG2	liver
7	chr4:110722000-110723000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:110722200-110723200	Active TSS	Duodenum Mucosa	Duodenum
9	chr4:110722200-110723200	Active TSS	Fetal Kidney	kidney
10	chr4:110722200-110723200	Active TSS	Psoas Muscle	Psoas
11	chr4:110722200-110723200	Active TSS	Right Ventricle	heart
12	chr4:110722200-110723400	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr4:110722200-110723400	Active TSS	Adipose Nuclei	Adipose
14	chr4:110722200-110723400	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr4:110722400-110723000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:110722400-110723200	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr4:110722400-110723400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:110722400-110723400	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr4:110722400-110723400	Flanking Active TSS	HUVEC	blood vessel
20	chr4:110722400-110723800	Enhancers	Osteobl	bone
21	chr4:110722400-110724000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:110722400-110724400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr4:110722600-110723400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:110722600-110724000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:110722600-110736200	Weak transcription	Pancreas	Pancrea
26	chr4:110722800-110723000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:110722800-110724000	Enhancers	NHLF	lung
28	chr4:110722800-110735800	Weak transcription	Brain Hippocampus Middle	brain

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