Variant report
| Variant | rs4339213 |
|---|---|
| Chromosome Location | chr4:110698575-110698576 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1000954 | 0.87[EUR][1000 genomes] |
| rs10016598 | 0.84[EUR][1000 genomes] |
| rs10049804 | 0.83[EUR][1000 genomes] |
| rs10857001 | 0.83[EUR][1000 genomes] |
| rs11098046 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11726234 | 0.87[EUR][1000 genomes] |
| rs12498247 | 0.89[EUR][1000 genomes] |
| rs12499926 | 0.86[EUR][1000 genomes] |
| rs12506605 | 0.89[EUR][1000 genomes] |
| rs12508074 | 0.87[EUR][1000 genomes] |
| rs12512308 | 0.86[EUR][1000 genomes] |
| rs17040826 | 0.87[ASN][1000 genomes] |
| rs2298749 | 0.87[ASN][1000 genomes] |
| rs28880991 | 0.87[EUR][1000 genomes] |
| rs3822272 | 0.87[ASN][1000 genomes] |
| rs4299581 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4371619 | 0.87[EUR][1000 genomes] |
| rs4600912 | 0.87[EUR][1000 genomes] |
| rs4698790 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4698792 | 0.86[EUR][1000 genomes] |
| rs62324937 | 0.87[EUR][1000 genomes] |
| rs6815517 | 0.86[EUR][1000 genomes] |
| rs72674894 | 0.86[EUR][1000 genomes] |
| rs72674895 | 0.87[EUR][1000 genomes] |
| rs72674896 | 0.87[EUR][1000 genomes] |
| rs7356506 | 0.87[ASN][1000 genomes] |
| rs7659870 | 0.86[EUR][1000 genomes] |
| rs7671905 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9647471 | 0.87[ASN][1000 genomes] |
| rs9654197 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349784 | chr4:110348873-110723163 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:110696600-110698600 | Weak transcription | Liver | Liver |
