Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10049804	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10857001	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098046	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11721403	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11726234	0.80[EUR][1000 genomes]
rs11734208	0.85[ASN][1000 genomes]
rs12508074	0.80[EUR][1000 genomes]
rs12512308	0.81[EUR][1000 genomes]
rs13108145	0.84[ASN][1000 genomes]
rs13129180	0.85[ASN][1000 genomes]
rs28880991	0.80[EUR][1000 genomes]
rs4299581	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4339213	0.84[EUR][1000 genomes]
rs4404543	0.85[ASN][1000 genomes]
rs4469075	0.92[ASN][1000 genomes]
rs4541508	0.82[ASN][1000 genomes]
rs4605655	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4698790	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62324937	0.80[EUR][1000 genomes]
rs6533457	0.82[ASN][1000 genomes]
rs72674895	0.80[EUR][1000 genomes]
rs72674896	0.80[EUR][1000 genomes]
rs7439356	0.85[ASN][1000 genomes]
rs7442601	0.81[ASN][1000 genomes]
rs7659870	0.81[EUR][1000 genomes]
rs7671905	0.87[EUR][1000 genomes]
rs7675460	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9654197	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv966307	chr4:110708883-110721699	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110709600-110714400	Weak transcription	HepG2	liver
2	chr4:110712200-110715000	Weak transcription	Liver	Liver

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