Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110624046..110626973-chr4:110689924..110691856,2	K562	blood:
2	chr4:110689596..110692531-chr4:110693989..110695768,2	K562	blood:

Variant related genes	Relation type
ENSG00000138794	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10016598	0.92[ASN][1000 genomes]
rs10049804	0.94[ASN][1000 genomes]
rs10857001	0.94[ASN][1000 genomes]
rs11098046	0.90[ASN][1000 genomes]
rs11721403	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs11734208	0.88[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13108145	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13129180	0.87[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17040826	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs2298749	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs3822272	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs4404543	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4541508	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4605655	0.86[ASN][1000 genomes]
rs4698784	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6533457	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7356506	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs7438961	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7439356	0.88[CEU][hapmap];0.82[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7442601	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7675460	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9647471	0.84[EUR][1000 genomes]
rs9654197	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv4463	chr4:110647731-110693125	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
3	esv17199	chr4:110690151-110690798	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110670600-110692000	Weak transcription	Pancreas	Pancrea
2	chr4:110687600-110690600	Weak transcription	HepG2	liver
3	chr4:110687800-110694400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:110689800-110691400	Strong transcription	Liver	Liver
5	chr4:110690000-110691000	Weak transcription	Spleen	Spleen
6	chr4:110690400-110691600	Strong transcription	Fetal Intestine Small	intestine

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