Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11734208	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13108145	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13129180	1.00[CEU][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17040826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610314	0.89[EUR][1000 genomes]
rs2298749	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339213	0.87[ASN][1000 genomes]
rs4404543	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4469075	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs4698784	0.84[MEX][hapmap]
rs62324896	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6836770	0.87[TSI][hapmap]
rs7356506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7438961	0.84[MEX][hapmap]
rs7439356	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7442601	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7671905	0.83[CHB][hapmap];0.87[ASN][1000 genomes]
rs885448	0.87[EUR][1000 genomes]
rs9647471	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9714929	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv4463	chr4:110647731-110693125	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3822272	RPL34	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110652000-110686000	Weak transcription	Ovary	ovary
2	chr4:110658000-110684000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:110659200-110689000	Weak transcription	Fetal Intestine Large	intestine
4	chr4:110665000-110690400	Weak transcription	Fetal Intestine Small	intestine
5	chr4:110670600-110692000	Weak transcription	Pancreas	Pancrea
6	chr4:110676600-110684200	Strong transcription	Liver	Liver
7	chr4:110683000-110685400	Weak transcription	HepG2	liver
8	chr4:110683200-110685400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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