Variant report

Variant	rs6836770
Chromosome Location	chr4:110668328-110668329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1000954	0.86[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs11098042	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12498247	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap]
rs13129180	0.86[TSI][hapmap]
rs17040826	0.87[TSI][hapmap]
rs17610314	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2298749	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs3822272	0.87[TSI][hapmap]
rs4288008	0.86[JPT][hapmap]
rs4626205	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56970406	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62324894	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533452	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533453	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815517	0.83[GIH][hapmap]
rs6848178	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs72674874	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs885448	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv4463	chr4:110647731-110693125	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6836770	CAMKK2	trans	parietal	SCAN
rs6836770	RPL34	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110651800-110669400	Weak transcription	Spleen	Spleen
2	chr4:110652000-110682800	Weak transcription	Left Ventricle	heart
3	chr4:110652000-110686000	Weak transcription	Ovary	ovary
4	chr4:110658000-110684000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:110658800-110669800	Weak transcription	Pancreas	Pancrea
6	chr4:110659200-110689000	Weak transcription	Fetal Intestine Large	intestine
7	chr4:110662000-110672400	Strong transcription	HepG2	liver
8	chr4:110665000-110690400	Weak transcription	Fetal Intestine Small	intestine
9	chr4:110665800-110670000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:110666400-110670800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:110667600-110671800	Weak transcription	K562	blood
12	chr4:110667800-110669800	Genic enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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