Variant report

Variant	rs885448
Chromosome Location	chr4:110690659-110690660
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110624046..110626973-chr4:110689924..110691856,2	K562	blood:
2	chr4:110689596..110692531-chr4:110693989..110695768,2	K562	blood:

Variant related genes	Relation type
ENSG00000138794	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1000954	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11098043	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11726234	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11734208	0.86[EUR][1000 genomes]
rs12498247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12499926	0.82[ASN][1000 genomes]
rs12506605	1.00[ASN][1000 genomes]
rs12508074	0.97[ASN][1000 genomes]
rs12512308	0.84[AMR][1000 genomes]
rs13108145	0.84[EUR][1000 genomes]
rs13129180	0.83[EUR][1000 genomes]
rs17040826	0.87[EUR][1000 genomes]
rs17610314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298749	0.87[EUR][1000 genomes]
rs28880991	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3822272	0.87[EUR][1000 genomes]
rs4288008	0.87[JPT][hapmap]
rs4371619	0.97[ASN][1000 genomes]
rs4404543	0.84[EUR][1000 genomes]
rs4600912	0.97[ASN][1000 genomes]
rs4626205	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4698792	0.82[ASN][1000 genomes]
rs62324896	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62324937	0.97[ASN][1000 genomes]
rs6815517	0.82[ASN][1000 genomes]
rs6836770	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6848178	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs72674894	0.97[ASN][1000 genomes]
rs72674895	0.97[ASN][1000 genomes]
rs72674896	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7356506	0.87[EUR][1000 genomes]
rs7439356	0.84[EUR][1000 genomes]
rs7659870	0.82[AMR][1000 genomes]
rs9647471	0.86[EUR][1000 genomes]
rs9714929	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv4463	chr4:110647731-110693125	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
3	esv17199	chr4:110690151-110690798	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110670600-110692000	Weak transcription	Pancreas	Pancrea
2	chr4:110687800-110694400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:110689800-110691400	Strong transcription	Liver	Liver
4	chr4:110690000-110691000	Weak transcription	Spleen	Spleen
5	chr4:110690400-110691600	Strong transcription	Fetal Intestine Small	intestine
6	chr4:110690600-110691400	Strong transcription	HepG2	liver

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