Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110650142..110652890-chr4:110673060..110675833,2	MCF-7	breast:
2	chr4:110665767..110668257-chr4:110672848..110675356,2	K562	blood:

Variant related genes	Relation type
ENSG00000123739	Chromatin interaction
ENSG00000205403	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1000954	0.87[ASN][1000 genomes]
rs11726234	0.87[ASN][1000 genomes]
rs11734208	0.81[EUR][1000 genomes]
rs12498247	0.90[ASN][1000 genomes]
rs12506605	0.90[ASN][1000 genomes]
rs12508074	0.87[ASN][1000 genomes]
rs13108145	0.82[EUR][1000 genomes]
rs13129180	0.81[EUR][1000 genomes]
rs17040826	0.85[EUR][1000 genomes]
rs17610314	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2298749	0.85[EUR][1000 genomes]
rs28880991	0.87[ASN][1000 genomes]
rs3822272	0.85[EUR][1000 genomes]
rs4371619	0.87[ASN][1000 genomes]
rs4404543	0.81[EUR][1000 genomes]
rs4600912	0.87[ASN][1000 genomes]
rs62324896	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62324937	0.87[ASN][1000 genomes]
rs72674894	0.87[ASN][1000 genomes]
rs72674895	0.87[ASN][1000 genomes]
rs72674896	0.87[ASN][1000 genomes]
rs7356506	0.85[EUR][1000 genomes]
rs7439356	0.82[EUR][1000 genomes]
rs885448	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9647471	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv4463	chr4:110647731-110693125	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
3	esv3376822	chr4:110673403-110675851	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3421464	chr4:110673703-110675801	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110652000-110682800	Weak transcription	Left Ventricle	heart
2	chr4:110652000-110686000	Weak transcription	Ovary	ovary
3	chr4:110658000-110684000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:110659200-110689000	Weak transcription	Fetal Intestine Large	intestine
5	chr4:110665000-110690400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:110670600-110692000	Weak transcription	Pancreas	Pancrea
7	chr4:110670800-110676600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:110672400-110676600	Weak transcription	Liver	Liver
9	chr4:110672400-110681000	Weak transcription	HepG2	liver
10	chr4:110672600-110676600	Weak transcription	K562	blood

Quick Search: