Variant report
| Variant | rs4288008 |
|---|---|
| Chromosome Location | chr4:110708573-110708574 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:110655703..110658317-chr4:110707050..110709224,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1000954 | 0.87[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10016598 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10049804 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10857001 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11098043 | 0.86[JPT][hapmap] |
| rs11726234 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12498247 | 0.87[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12499926 | 0.87[EUR][1000 genomes] |
| rs12506605 | 0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12508074 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12512308 | 0.88[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs17610314 | 0.85[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs28880991 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4371619 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4600912 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4626205 | 0.85[CEU][hapmap];0.93[JPT][hapmap] |
| rs4698792 | 0.87[EUR][1000 genomes] |
| rs62324937 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6815517 | 0.87[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs6836770 | 0.86[JPT][hapmap] |
| rs6848178 | 0.80[JPT][hapmap] |
| rs72674894 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72674895 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72674896 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7659870 | 0.85[EUR][1000 genomes] |
| rs885448 | 0.87[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs9654197 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3349784 | chr4:110348873-110723163 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
