Variant report

Variant	rs7445819
Chromosome Location	chr5:35911309-35911310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10043573	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10053847	0.83[ASN][1000 genomes]
rs10054418	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10056484	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058680	0.81[ASN][1000 genomes]
rs10059688	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10070378	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10472264	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472989	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472990	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11567722	0.81[ASN][1000 genomes]
rs11567738	0.81[ASN][1000 genomes]
rs11567754	0.81[ASN][1000 genomes]
rs11567761	0.81[ASN][1000 genomes]
rs13154973	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13162685	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167136	0.83[ASN][1000 genomes]
rs13169780	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13169814	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13170810	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13172065	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1389834	0.83[ASN][1000 genomes]
rs1389835	0.83[ASN][1000 genomes]
rs1494559	0.81[ASN][1000 genomes]
rs16899999	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1862632	0.83[ASN][1000 genomes]
rs2228141	0.81[ASN][1000 genomes]
rs3822731	0.81[ASN][1000 genomes]
rs4869430	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451234	0.92[EUR][1000 genomes]
rs6451236	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451239	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6859892	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6888699	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6891095	0.81[ASN][1000 genomes]
rs7381123	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7710177	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7727750	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292618	0.83[ASN][1000 genomes]
rs969128	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv4794	chr5:35906690-35934205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35909400-35912000	Weak transcription	Thymus	Thymus
2	chr5:35909800-35912400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:35910800-35913200	ZNF genes & repeats	Dnd41	blood

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