Variant report

Variant	rs11567738
Chromosome Location	chr5:35868507-35868508
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10043573	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10053847	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10056484	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10058680	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10059688	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10070378	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10472264	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10472989	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10472990	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1073290	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11567722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11567754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11567761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520952	0.90[EUR][1000 genomes]
rs13154973	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13162685	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13167136	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13169780	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13169814	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13170810	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13172065	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1389834	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1389835	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1494559	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899999	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1862632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2228141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34496007	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35467464	0.90[EUR][1000 genomes]
rs35588638	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521502	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4601063	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4869430	0.81[ASN][1000 genomes]
rs4869492	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6451236	0.81[ASN][1000 genomes]
rs66570838	0.90[EUR][1000 genomes]
rs6888699	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6891095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892488	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7445819	0.81[ASN][1000 genomes]
rs7710177	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7718489	0.85[EUR][1000 genomes]
rs7718919	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7727750	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9292618	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs969128	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv880517	chr5:35850693-35870814	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv880591	chr5:35859863-35870588	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv597815	chr5:35864590-35871684	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35857400-35869200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
2	chr5:35860000-35869000	Weak transcription	HMEC	breast
3	chr5:35860000-35876600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:35860400-35872800	Weak transcription	Spleen	Spleen
5	chr5:35860400-35883800	Weak transcription	Small Intestine	intestine
6	chr5:35861200-35870400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr5:35862400-35870400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:35862600-35868600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:35862600-35876200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:35863600-35868800	Weak transcription	Lung	lung
11	chr5:35863800-35868800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:35863800-35869000	Weak transcription	GM12878-XiMat	blood
13	chr5:35863800-35876200	Weak transcription	NHDF-Ad	bronchial
14	chr5:35864200-35869600	Weak transcription	Primary B cells from cord blood	blood
15	chr5:35864600-35876600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr5:35866000-35868800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr5:35866000-35873400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:35866200-35878400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:35866400-35869200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:35866400-35872400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
21	chr5:35866600-35872200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:35866600-35878800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr5:35866600-35882000	Genic enhancers	Dnd41	blood
24	chr5:35867000-35868800	Genic enhancers	Primary T cells fromperipheralblood	blood
25	chr5:35867200-35872200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:35867400-35869000	Strong transcription	Thymus	Thymus
27	chr5:35867600-35868600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr5:35867600-35868800	Genic enhancers	Primary T cells from cord blood	blood
29	chr5:35867600-35869800	Strong transcription	Osteobl	bone
30	chr5:35867600-35878000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr5:35867800-35876400	Strong transcription	NHLF	lung
32	chr5:35867800-35879800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr5:35868200-35870200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr5:35868200-35871000	Genic enhancers	Fetal Thymus	thymus
35	chr5:35868200-35876000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr5:35868400-35871000	Strong transcription	HSMM	muscle

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