Variant report

Variant	rs35467464
Chromosome Location	chr5:35841531-35841532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10043573	0.84[EUR][1000 genomes]
rs10053847	0.90[EUR][1000 genomes]
rs10058680	0.93[EUR][1000 genomes]
rs1073290	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11567722	0.93[EUR][1000 genomes]
rs11567738	0.90[EUR][1000 genomes]
rs11567754	0.90[EUR][1000 genomes]
rs11567761	0.90[EUR][1000 genomes]
rs12520952	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167136	0.90[EUR][1000 genomes]
rs13172065	0.84[EUR][1000 genomes]
rs13180666	0.86[ASN][1000 genomes]
rs1389834	0.89[EUR][1000 genomes]
rs1389835	0.89[EUR][1000 genomes]
rs1494559	0.93[EUR][1000 genomes]
rs16899999	0.84[EUR][1000 genomes]
rs1862632	0.90[EUR][1000 genomes]
rs2228141	0.90[EUR][1000 genomes]
rs34496007	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35588638	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3822731	0.90[EUR][1000 genomes]
rs4521502	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4601063	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4869492	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66570838	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888699	0.84[EUR][1000 genomes]
rs6891095	0.93[EUR][1000 genomes]
rs6892488	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7718489	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7718919	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9292618	0.90[EUR][1000 genomes]
rs969128	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3379714	chr5:35841120-35843568	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35839000-35841800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:35839000-35842000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:35840000-35841600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr5:35840000-35841600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr5:35840800-35841800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:35841200-35841600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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